EY756643

Overview
NameEY756643
Unique NameEY756643
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756643 vs. ExPASy Swiss-Prot
Match: RS13_METAC (30S ribosomal protein S13P OS=Methanosarcina acetivorans GN=rps13p PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 49/134 (36.57%), Postives = 79/134 (58.96%), Query Frame = 1
Query:    4 VDPRVREDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 405
            V+    E+ +H++R++NT++ G + + +ALT + G+GRR A ++ K A VD +   G L   E+  L   +       +P W LNRQKD   G+   ++   + +  R+D+  LKK+R +RGLRH  GL+VRGQ
Sbjct:   12 VEENNNEELRHLVRIMNTDLQGAKPVQYALTGLPGVGRRTAKLIAKGAGVDPSAILGYLPEEEVAKLDTAIGKFEDI-VPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKVRAYRGLRHERGLKVRGQ 144          
BLAST of EY756643 vs. ExPASy Swiss-Prot
Match: RS13_METBF (30S ribosomal protein S13P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps13p PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.322e-21
Identity = 51/134 (38.06%), Postives = 80/134 (59.70%), Query Frame = 1
Query:    4 VDPRVREDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 405
            V+ +  E+ +H++R++NT++ G + + +ALT + GIGRR A ++ K A VD     G L   E+  L   + N     +P W LNRQKD   G+   ++   + +  R+D+  LKK+R +RGLRH  GL+VRGQ
Sbjct:   12 VEEKNNEEIRHLVRIMNTDLKGAKPVEYALTGLPGIGRRTAILIAKGAGVDPTATLGYLPDEEVAKLDRAIGNFEGI-VPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKVRAYRGLRHERGLKVRGQ 144          
BLAST of EY756643 vs. ExPASy Swiss-Prot
Match: RS13_METMA (30S ribosomal protein S13P OS=Methanosarcina mazei GN=rps13p PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.186e-20
Identity = 49/128 (38.28%), Postives = 77/128 (60.16%), Query Frame = 1
Query:   22 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 405
            E+ +H++R++NT++ G + + +ALT + GIGRR A ++ K A VD     G L   E+  L   +    +  +P W LNRQKD   G+   ++   + +  R+D+  LKK+R +RGLRH  GL+VRGQ
Sbjct:   18 EELRHLVRIMNTDLKGAKPVEYALTGLPGIGRRTAILIAKGAGVDPTATLGYLPDEEVAKLDAAIGKFEEI-VPSWMLNRQKDLTTGQDKHLLGTDILLTFREDINNLKKVRAYRGLRHERGLKVRGQ 144          
BLAST of EY756643 vs. ExPASy Swiss-Prot
Match: RS13_AERPE (30S ribosomal protein S13P OS=Aeropyrum pernix GN=rps13p PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.712e-19
Identity = 52/144 (36.11%), Postives = 78/144 (54.17%), Query Frame = 1
Query:   28 FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 459
            F++I+R+   ++DG  K+ + L SIKGIG   A  V +   +D  K+ G L+  E+  L  V+ +  Q  +P W  NR+KDY+ GK   ++ + L    R D+ER  KI + RG+RH +GL+VRGQ               KKR
Sbjct:    7 FKYIVRIAGVDIDGDLKLPYGLASIKGIGYTTAMAVIRMLGLDPEKKVGFLTEEEIRRLDEVLRDITQLGLPKWLYNRRKDYETGKDLHLIGSELIFYARRDIEREMKIGSWRGIRHKYGLKVRGQRTRTTGRLGMTIGVRKKR 150          
BLAST of EY756643 vs. ExPASy Swiss-Prot
Match: RS13_METHJ (30S ribosomal protein S13P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps13p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.920e-19
Identity = 49/128 (38.28%), Postives = 76/128 (59.38%), Query Frame = 1
Query:   22 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 405
            ++  + +RV NT++DG + ++ +LT IKG+GR  A  + + A V+ N   G+L  A +D +  VV+N    +IP W  NR KD   G    ++   + M + DD+  LKKIR +RG+RH  G +VRGQ
Sbjct:    6 QEINYFVRVHNTDLDGTKPVLISLTGIKGVGRHTAKFIAETAGVEKNVLMGKLDEASVDRIREVVSNYAD-RIPVWMSNRPKDVYTGVKRHLLGADVTMTVDDDINLLKKIRAYRGIRHETGQKVRGQ 132          
BLAST of EY756643 vs. ExPASy Swiss-Prot
Match: RS13_METBU (30S ribosomal protein S13P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps13p PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.814e-19
Identity = 47/128 (36.72%), Postives = 78/128 (60.94%), Query Frame = 1
Query:   22 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 405
            E+ +H++R++NT++ GK+ + +ALT I+GIG R + ++     +D N   G LS  ++  L   +    + ++P W LNRQ D   G+   ++   + + L++DL  LKK R +RGLRH  GL+VRGQ
Sbjct:    4 EEIRHLVRIMNTDLQGKKPVKYALTGIRGIGLRTSRVIVDSTGIDPNAVIGYLSDEDIKKLDSTIDKFEE-QLPKWMLNRQFDPLTGENKHLLGQDIILTLKEDLNDLKKSRAYRGLRHERGLKVRGQ 130          
BLAST of EY756643 vs. ExPASy Swiss-Prot
Match: RS13_HALMA (30S ribosomal protein S13P OS=Haloarcula marismortui GN=rps13p PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.981e-19
Identity = 49/133 (36.84%), Postives = 76/133 (57.14%), Query Frame = 1
Query:    7 DPRVREDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 405
            D    ED ++ +R+  T++DG + +  ALT + GIG R A I+ +KADVD     G+L    ++ ++  V N     +P+W  N QKDY  G+ +    N L +  R D+ R+K I ++RG+RH  G +VRGQ
Sbjct:   13 DAEEEEDIRYFVRIGQTDLDGTKSVERALTELNGIGHRAARIIAQKADVDRRAVFGKLDDDVIERVVERVENFAD-DVPEWMTNHQKDYFTGETTHETGNDLQLTRRQDINRMKMIDSYRGVRHKRGQKVRGQ 144          
BLAST of EY756643 vs. ExPASy Swiss-Prot
Match: RS13_ARCFU (30S ribosomal protein S13P OS=Archaeoglobus fulgidus GN=rps13p PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.506e-19
Identity = 49/126 (38.89%), Postives = 76/126 (60.32%), Query Frame = 1
Query:   28 FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 405
            F+HI+R+ +T++DG + +MFALT IKGIG R A  +  +  VD   + GEL    ++ +   V    +  +P W LNR+KD   G+   ++S  +D     D+ERL K++ +RG+RH  G +VRGQ
Sbjct:    3 FKHIVRIADTDLDGNKSLMFALTGIKGIGLRAARCIVNELGVDGRAKLGELDDETIEKVKKFVEEEIE-SLPSWLLNRRKDPYSGQDLHLLSKDVDFARMLDIERLIKMKAYRGVRHARGKKVRGQ 127          
BLAST of EY756643 vs. ExPASy Swiss-Prot
Match: RS13_THEPD (30S ribosomal protein S13P OS=Thermofilum pendens (strain Hrk 5) GN=rps13p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.472e-18
Identity = 46/127 (36.22%), Postives = 79/127 (62.20%), Query Frame = 1
Query:   25 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 405
            +F++I+RV   ++ G + +++AL  IKGIG   A  V KK  +D  +  G LS  E++ L   +    +  +P W LNR+KD   G    ++++ L + +R+D+E +KKI++++G+RH  GL+VRGQ
Sbjct:    4 EFRYIVRVAGVDLPGDKALVYALADIKGIGVSTAQAVAKKLGLDPYRLLGTLSEEEVEKLSAALREIEKLGLPPWMLNRRKDPFLGVDRHLITSDLLITVRNDIEFMKKIKSYKGVRHMLGLKVRGQ 130          
BLAST of EY756643 vs. ExPASy Swiss-Prot
Match: RS13_PYRIL (30S ribosomal protein S13P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps13p PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.227e-17
Identity = 44/128 (34.38%), Postives = 81/128 (63.28%), Query Frame = 1
Query:   22 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 405
            ++ + I+R+ +T++DG +++ ++LT I+GIG   A  +C+K  +D +   G LS  +++ L   V N  +   P WFLNR+KD + GK   ++   L +  + D++ +KK+++ +G+RH  GL+VRGQ
Sbjct:    3 QEIRAIVRIGDTDLDGNKQVAYSLTKIRGIGIATAYAICRKLGIDPHAILGALSEEQINKLDWAVRNLHELA-PAWFLNRRKDPETGKDLHLIGAELVLAAKRDVDLMKKLKSWKGVRHSLGLKVRGQ 129          
The following BLAST results are available for this feature:
BLAST of EY756643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RS13_METAC3.120e-2136.5730S ribosomal protein S13P OS=Methanosarcina aceti... [more]
RS13_METBF5.322e-2138.0630S ribosomal protein S13P OS=Methanosarcina barke... [more]
RS13_METMA1.186e-2038.2830S ribosomal protein S13P OS=Methanosarcina mazei... [more]
RS13_AERPE1.712e-1936.1130S ribosomal protein S13P OS=Aeropyrum pernix GN=... [more]
RS13_METHJ2.920e-1938.2830S ribosomal protein S13P OS=Methanospirillum hun... [more]
RS13_METBU3.814e-1936.7230S ribosomal protein S13P OS=Methanococcoides bur... [more]
RS13_HALMA4.981e-1936.8430S ribosomal protein S13P OS=Haloarcula marismort... [more]
RS13_ARCFU6.506e-1938.8930S ribosomal protein S13P OS=Archaeoglobus fulgid... [more]
RS13_THEPD2.472e-1836.2230S ribosomal protein S13P OS=Thermofilum pendens ... [more]
RS13_PYRIL1.227e-1734.3830S ribosomal protein S13P OS=Pyrobaculum islandic... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-011-A02-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756643 ID=EY756643; Name=EY756643; organism=Citrus sinensis; type=EST; length=703bp
TTCGTCGACCCACGCGTCCGCGAAGATTTTCAGCACATTTTGCGTGTGCT
GAACACTAACGTCGACGGGAAGCAGAAGATTATGTTTGCTCTTACTTCAA
TTAAGGGTATTGGAAGGCGACTGGCTAACATCGTTTGCAAGAAAGCTGAT
GTTGACATGAACAAGAGGGCCGGTGAACTATCTGCTGCTGAACTTGACAA
TCTCATGGTCGTTGTTGCAAATCCCCGACAGTTTAAAATCCCTGATTGGT
TCTTGAACAGACAGAAGGATTACAAAGATGGAAAGTATTCTCAGGTTGTA
TCCAATGCACTGGACATGAAGTTGAGAGATGATTTGGAGCGTCTGAAGAA
GATCAGGAACCACCGTGGTCTCAGGCACTACTGGGGTCTTCGTGTCCGTG
GACAACACACCAAGACCACCGGTCGTCGTGGAAAGACTGTTGGTGTCTCC
AAGAAGCGTTGAGCTGTCCGTTATCAATGTTTTGAACAATCTATACACAT
GTTCAGGAAGAGTTTGGACTTGCTATTGCTGAACATTTGCATCAGACAAT
ATTAGATTTATTTTCTTTTCTTTGGATGGGGTTTAAGCATTTTGACTGTC
TGGCTTTTATCTATTATTTTCTCTATGGGAATATTTTTATTCAGATGTTT
TGCAACATATATTTCATCTCCCCTCTTTTATCTCAAAAAAAAAAAAAAAA
AAA
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