EY756621

Overview
NameEY756621
Unique NameEY756621
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length428
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756621 vs. ExPASy Swiss-Prot
Match: GCSH_PHOLL (Glycine cleavage system H protein OS=Photorhabdus luminescens subsp. laumondii GN=gcvH PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.580e-19
Identity = 43/88 (48.86%), Postives = 58/88 (65.91%), Query Frame = 1
Query:   13 FVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 276
            FV+LPE G  +  G    VVESVKA SD+ +P+SG++I VN  L + P LVNS PY EGWL ++K S  S+L SL++ + Y    +EE
Sbjct:   42 FVDLPEVGDQINLGDDCAVVESVKAASDIYAPLSGKIIAVNDALNDAPELVNSEPYHEGWLFRIKASDKSELSSLLNAEGYQALLDEE 129          
BLAST of EY756621 vs. ExPASy Swiss-Prot
Match: GCSH_MYXXD (Glycine cleavage system H protein OS=Myxococcus xanthus (strain DK 1622) GN=gcvH PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.580e-19
Identity = 39/84 (46.43%), Postives = 62/84 (73.81%), Query Frame = 1
Query:    7 VRFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYT 258
            V +VELP+ G++V +G  FGV+ES KA S++ SP++G+V++VN  L++ P  VN+ PY  GW+++++PS P  ++ LMD  AYT
Sbjct:   40 VVYVELPKVGSTVTEGKQFGVIESTKAVSELYSPLTGKVVKVNDGLSDNPSTVNTDPYGAGWIVEIEPSDPKQVDGLMDAAAYT 123          
BLAST of EY756621 vs. ExPASy Swiss-Prot
Match: GCSH_BACSU (Glycine cleavage system H protein OS=Bacillus subtilis GN=gcvH PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.982e-19
Identity = 43/88 (48.86%), Postives = 60/88 (68.18%), Query Frame = 1
Query:   13 FVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 276
            FVELPE GA +K    FG VESVK  S++ +PI+G V+EVN  L ++P  VN SPYE+ W+I V+PS  S++E LM  + Y +  +E+
Sbjct:   40 FVELPEVGAEIKADEPFGSVESVKTVSELYAPINGTVVEVNEDLDDSPEFVNESPYEKAWMIVVEPSDASEIEKLMTAEQYEEMTQED 127          
BLAST of EY756621 vs. ExPASy Swiss-Prot
Match: GCSH_SHESR (Glycine cleavage system H protein OS=Shewanella sp. (strain MR-7) GN=gcvH PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.813e-19
Identity = 45/88 (51.14%), Postives = 58/88 (65.91%), Query Frame = 1
Query:   13 FVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 276
            FVELPE G +V  G    V ESVKA SD+ +PISGEVI VN  L ++P LVNS  Y EGW  +V PS  S++++L+D + Y    +EE
Sbjct:   42 FVELPEVGDTVTAGNDCAVAESVKAASDIYAPISGEVIAVNEALEDSPELVNSDAYGEGWFFRVMPSDESEVDALLDAEGYQAVIDEE 129          
BLAST of EY756621 vs. ExPASy Swiss-Prot
Match: GCSH_SACD2 (Glycine cleavage system H protein OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=gcvH PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.813e-19
Identity = 46/91 (50.55%), Postives = 58/91 (63.74%), Query Frame = 1
Query:    7 VRFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEEN 279
            V FVE+PE G+ V  G   GVVESVKA SD+ SP+SGEVI VN  L + P  VNSSPY++GW  KVKP    +LE  +  + Y    E ++
Sbjct:   40 VVFVEVPEVGSQVSIGEEAGVVESVKAASDIYSPVSGEVIAVNEALEDAPETVNSSPYDDGWFFKVKPDDLDELEKALSMEDYKAAIESDD 130          
BLAST of EY756621 vs. ExPASy Swiss-Prot
Match: GCSH_HALLT (Probable glycine cleavage system H protein OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=gcvH PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.813e-19
Identity = 43/83 (51.81%), Postives = 56/83 (67.47%), Query Frame = 1
Query:    7 VRFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAY 255
            V FVELPE G  +  G  FGVVES+KA SD+ +P+SGEV+ VN +L + P LVN  PY +GWL++V+P    D E L+D   Y
Sbjct:   40 VVFVELPEAGDEITAGEAFGVVESIKAVSDLYAPVSGEVVAVNEELFDRPELVNEDPYGDGWLLEVEPVEGGDAEGLLDADEY 122          
BLAST of EY756621 vs. ExPASy Swiss-Prot
Match: GCSH_CAUCR (Glycine cleavage system H protein OS=Caulobacter crescentus GN=gcvH PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.813e-19
Identity = 47/86 (54.65%), Postives = 58/86 (67.44%), Query Frame = 1
Query:    7 VRFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKF 264
            V FVE PE G  VKQG G  VVESVKA SDV +P+SGEVIE N +L   P  VN+ P   GW  K+K ++P++L++LMD  AY  F
Sbjct:   32 VVFVETPEAGKVVKQGEGLAVVESVKAASDVYAPVSGEVIEGNGELAGAPETVNALPESGGWFAKIKLANPAELDALMDRDAYEAF 117          
BLAST of EY756621 vs. ExPASy Swiss-Prot
Match: GCSH_CAUCN (Glycine cleavage system H protein OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=gcvH PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.813e-19
Identity = 47/86 (54.65%), Postives = 58/86 (67.44%), Query Frame = 1
Query:    7 VRFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKF 264
            V FVE PE G  VKQG G  VVESVKA SDV +P+SGEVIE N +L   P  VN+ P   GW  K+K ++P++L++LMD  AY  F
Sbjct:   32 VVFVETPEAGKVVKQGEGLAVVESVKAASDVYAPVSGEVIEGNGELAGAPETVNALPESGGWFAKIKLANPAELDALMDRDAYEAF 117          
BLAST of EY756621 vs. ExPASy Swiss-Prot
Match: GCSH_BREBN (Glycine cleavage system H protein OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=gcvH PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.813e-19
Identity = 43/87 (49.43%), Postives = 62/87 (71.26%), Query Frame = 1
Query:   13 FVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 273
            FVELPE GA+++Q   FG VESVK  S++ +P++G+V+EVN +L + P LVNSSPYE+ W+I V+ S  ++L+ LMD   Y    +E
Sbjct:   40 FVELPEVGATIQQDEPFGSVESVKTVSELYAPVTGKVVEVNGELEDAPELVNSSPYEQAWMIVVELSDTAELDKLMDADKYEAMVKE 126          
BLAST of EY756621 vs. ExPASy Swiss-Prot
Match: GCSH_SHESM (Glycine cleavage system H protein OS=Shewanella sp. (strain MR-4) GN=gcvH PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.020e-18
Identity = 45/88 (51.14%), Postives = 58/88 (65.91%), Query Frame = 1
Query:   13 FVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 276
            FVELPE G +V  G    V ESVKA SD+ +PISGEVI VN  L ++P LVNS  Y EGW  +V PS  S++++L+D + Y    +EE
Sbjct:   42 FVELPEVGDTVTAGDDCAVAESVKAASDIYAPISGEVIAVNEALEDSPELVNSDAYGEGWFFRVMPSDESEVDALLDAEGYQAVIDEE 129          
The following BLAST results are available for this feature:
BLAST of EY756621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
GCSH_PHOLL4.580e-1948.86Glycine cleavage system H protein OS=Photorhabdus ... [more]
GCSH_MYXXD4.580e-1946.43Glycine cleavage system H protein OS=Myxococcus xa... [more]
GCSH_BACSU5.982e-1948.86Glycine cleavage system H protein OS=Bacillus subt... [more]
GCSH_SHESR7.813e-1951.14Glycine cleavage system H protein OS=Shewanella sp... [more]
GCSH_SACD27.813e-1950.55Glycine cleavage system H protein OS=Saccharophagu... [more]
GCSH_HALLT7.813e-1951.81Probable glycine cleavage system H protein OS=Halo... [more]
GCSH_CAUCR7.813e-1954.65Glycine cleavage system H protein OS=Caulobacter c... [more]
GCSH_CAUCN7.813e-1954.65Glycine cleavage system H protein OS=Caulobacter c... [more]
GCSH_BREBN7.813e-1949.43Glycine cleavage system H protein OS=Brevibacillus... [more]
GCSH_SHESM1.020e-1851.14Glycine cleavage system H protein OS=Shewanella sp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-010-G03-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756621 ID=EY756621; Name=EY756621; organism=Citrus sinensis; type=EST; length=428bp
CCACGCGTCCGGTTTGTGGAGCTGCCAGAAACTGGTGCCTCAGTCAAACA
AGGCGGCGGCTTCGGGGTTGTAGAAAGTGTGAAAGCAACCAGTGACGTTA
ATTCCCCCATTTCTGGTGAAGTTATTGAGGTTAACACCAAGCTCACTGAA
ACGCCTGGCTTGGTCAATTCAAGCCCATATGAAGAAGGATGGCTGATAAA
GGTGAAGCCTAGCAGCCCTTCGGATTTAGAATCCTTGATGGATCCACAGG
CTTACACGAAATTTTGCGAAGAAGAAAATGCAGCTCATTAGAATCTTCAC
ATTGTTTCATTTTCTTTTCCCAAAACATACTAATAAATCTCTTTGTTTTA
CTCGCTATGTGTGTTGTAATTCTGCATCTTCATGTAATTAAGACCCATTT
CTCCAAAAAAAAAAAAAAAAAAAAAAAA
back to top