EY756621 | Citrus Genome Database

Overview


Name	EY756621
Unique Name	EY756621
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	428

Libraries


Library Name	Type
Sweet orange leaf, field plant B	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY756621 vs. ExPASy Swiss-Prot
Match: GCSH_SALA4 (Glycine cleavage system H protein OS=Salmonella agona (strain SL483) GN=gcvH PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.347e-21
Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 1

Query:   13 FVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 276
            FV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   42 FVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of EY756621 vs. ExPASy Swiss-Prot
Match: GCSH_ESCF3 (Glycine cleavage system H protein OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gcvH PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.347e-21
Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 1

Query:   13 FVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 276
            FV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   42 FVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of EY756621 vs. ExPASy Swiss-Prot
Match: GCSH_ECOSM (Glycine cleavage system H protein OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=gcvH PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.347e-21
Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 1

Query:   13 FVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 276
            FV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   42 FVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of EY756621 vs. ExPASy Swiss-Prot
Match: GCSH_ECOSE (Glycine cleavage system H protein OS=Escherichia coli (strain SE11) GN=gcvH PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.347e-21
Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 1

Query:   13 FVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 276
            FV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   42 FVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of EY756621 vs. ExPASy Swiss-Prot
Match: GCSH_ECOLU (Glycine cleavage system H protein OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=gcvH PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.347e-21
Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 1

Query:   13 FVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 276
            FV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   42 FVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of EY756621 vs. ExPASy Swiss-Prot
Match: GCSH_ECOLI (Glycine cleavage system H protein OS=Escherichia coli (strain K12) GN=gcvH PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 8.347e-21
Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 1

Query:   13 FVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 276
            FV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   42 FVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of EY756621 vs. ExPASy Swiss-Prot
Match: GCSH_ECOLC (Glycine cleavage system H protein OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=gcvH PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.347e-21
Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 1

Query:   13 FVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 276
            FV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   42 FVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of EY756621 vs. ExPASy Swiss-Prot
Match: GCSH_ECOL6 (Glycine cleavage system H protein OS=Escherichia coli O6 GN=gcvH PE=3 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 8.347e-21
Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 1

Query:   13 FVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 276
            FV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   42 FVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of EY756621 vs. ExPASy Swiss-Prot
Match: GCSH_ECOL5 (Glycine cleavage system H protein OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=gcvH PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.347e-21
Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 1

Query:   13 FVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 276
            FV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   42 FVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of EY756621 vs. ExPASy Swiss-Prot
Match: GCSH_ECOK1 (Glycine cleavage system H protein OS=Escherichia coli O1:K1 / APEC GN=gcvH PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.347e-21
Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 1

Query:   13 FVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 276
            FV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   42 FVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

The following BLAST results are available for this feature:

BLAST of EY756621 vs. ExPASy Swiss-Prot

BLAST of EY756621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433


Match Name	E-value	Identity	Description
GCSH_SALA4	8.347e-21	52.27	Glycine cleavage system H protein OS=Salmonella ag...	[more]
GCSH_ESCF3	8.347e-21	52.27	Glycine cleavage system H protein OS=Escherichia f...	[more]
GCSH_ECOSM	8.347e-21	52.27	Glycine cleavage system H protein OS=Escherichia c...	[more]
GCSH_ECOSE	8.347e-21	52.27	Glycine cleavage system H protein OS=Escherichia c...	[more]
GCSH_ECOLU	8.347e-21	52.27	Glycine cleavage system H protein OS=Escherichia c...	[more]
GCSH_ECOLI	8.347e-21	52.27	Glycine cleavage system H protein OS=Escherichia c...	[more]
GCSH_ECOLC	8.347e-21	52.27	Glycine cleavage system H protein OS=Escherichia c...	[more]
GCSH_ECOL6	8.347e-21	52.27	Glycine cleavage system H protein OS=Escherichia c...	[more]
GCSH_ECOL5	8.347e-21	52.27	Glycine cleavage system H protein OS=Escherichia c...	[more]
GCSH_ECOK1	8.347e-21	52.27	Glycine cleavage system H protein OS=Escherichia c...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS13-C1-001-010-G03-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY756621 ID=EY756621; Name=EY756621; organism=Citrus sinensis; type=EST; length=428bp
CCACGCGTCCGGTTTGTGGAGCTGCCAGAAACTGGTGCCTCAGTCAAACA
AGGCGGCGGCTTCGGGGTTGTAGAAAGTGTGAAAGCAACCAGTGACGTTA
ATTCCCCCATTTCTGGTGAAGTTATTGAGGTTAACACCAAGCTCACTGAA
ACGCCTGGCTTGGTCAATTCAAGCCCATATGAAGAAGGATGGCTGATAAA
GGTGAAGCCTAGCAGCCCTTCGGATTTAGAATCCTTGATGGATCCACAGG
CTTACACGAAATTTTGCGAAGAAGAAAATGCAGCTCATTAGAATCTTCAC
ATTGTTTCATTTTCTTTTCCCAAAACATACTAATAAATCTCTTTGTTTTA
CTCGCTATGTGTGTTGTAATTCTGCATCTTCATGTAATTAAGACCCATTT
CTCCAAAAAAAAAAAAAAAAAAAAAAAA