EY756621

Overview
NameEY756621
Unique NameEY756621
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length428
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756621 vs. ExPASy Swiss-Prot
Match: GCSH_ECO24 (Glycine cleavage system H protein OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=gcvH PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.347e-21
Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 1
Query:   13 FVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 276
            FV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   42 FVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYETLLEDE 129          
BLAST of EY756621 vs. ExPASy Swiss-Prot
Match: GCSH_SHIDS (Glycine cleavage system H protein OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=gcvH PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.090e-20
Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 1
Query:   13 FVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 276
            FV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   42 FVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDVLSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129          
BLAST of EY756621 vs. ExPASy Swiss-Prot
Match: GCSH_SALPB (Glycine cleavage system H protein OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=gcvH PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.090e-20
Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 1
Query:   13 FVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 276
            FV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   42 FVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYVGGWIFKIKASDESELESLLDATAYEALLEDE 129          
BLAST of EY756621 vs. ExPASy Swiss-Prot
Match: GCSH_CHRSD (Glycine cleavage system H protein OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=gcvH PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.424e-20
Identity = 48/90 (53.33%), Postives = 60/90 (66.67%), Query Frame = 1
Query:    7 VRFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 276
            V FVELPETG  +  G  FGV+ESVKA SD+  P+SGE+I VN  L + P  VN +PYE+GW+IK+K + P  LESL+D  AY      E
Sbjct:   40 VVFVELPETGRELDAGEEFGVIESVKAASDLYLPLSGEIIAVNESLEDAPETVNDNPYEDGWIIKLKLAEPEALESLLDATAYDALVSAE 129          
BLAST of EY756621 vs. ExPASy Swiss-Prot
Match: GCSH_SYNR3 (Glycine cleavage system H protein OS=Synechococcus sp. (strain RCC307) GN=gcvH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.860e-20
Identity = 41/82 (50.00%), Postives = 60/82 (73.17%), Query Frame = 1
Query:   13 FVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYT 258
            FVELPE GAS+++G  FG VESVKA  ++ +P+SG V+  N  + +TP L+ + PY+EGWL+K+ P+ PS +E LMD  +Y+
Sbjct:   42 FVELPEVGASIEKGSSFGTVESVKAVEEMYAPVSGTVVAANQAVIDTPELLQNDPYQEGWLLKITPADPSQMEQLMDATSYS 123          
BLAST of EY756621 vs. ExPASy Swiss-Prot
Match: GCSH_RUBXD (Glycine cleavage system H protein OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=gcvH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.860e-20
Identity = 50/90 (55.56%), Postives = 62/90 (68.89%), Query Frame = 1
Query:    7 VRFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 276
            V FVELPE G+SV+ G  FG +ESVKA SD+ SP+SGEV EVNT L E+P  VN  PY EGWL++V+ S   D   L+ P+ Y +  EEE
Sbjct:   39 VVFVELPEVGSSVQAGEPFGTIESVKAVSDLYSPVSGEVTEVNTSLEESPEKVNEDPYGEGWLLRVRLSEEPD---LLSPEEYARRLEEE 125          
BLAST of EY756621 vs. ExPASy Swiss-Prot
Match: GCSH_MAGSM (Glycine cleavage system H protein OS=Magnetococcus sp. (strain MC-1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.860e-20
Identity = 45/88 (51.14%), Postives = 63/88 (71.59%), Query Frame = 1
Query:    7 VRFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCE 270
            V FVELP+   +++ GG FGVVESVKA SD+ SPI+G+VI  N  L E P LVN  PY +GW++++KP  P+ +++L+  QAYT + E
Sbjct:   38 VVFVELPQVEDTLQMGGTFGVVESVKAASDLFSPITGQVIATNPDLAEAPELVNEDPYGKGWMLRLKPEDPAQMDALLTAQAYTAWLE 125          
BLAST of EY756621 vs. ExPASy Swiss-Prot
Match: GCSH_YERE8 (Glycine cleavage system H protein OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=gcvH PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.429e-20
Identity = 46/87 (52.87%), Postives = 60/87 (68.97%), Query Frame = 1
Query:   13 FVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 273
            FV+LPE G+ V  G    V ESVKA SD+ +PISGE+I VN +L  +P LVNS+PY +GWL  +K S  S+L+SL+D +AY    EE
Sbjct:   42 FVDLPEVGSEVSAGSDCAVAESVKAASDIYAPISGEIIAVNAELESSPELVNSAPYTDGWLFSIKASDESELDSLLDAEAYLATIEE 128          
BLAST of EY756621 vs. ExPASy Swiss-Prot
Match: GCSH_RHORT (Glycine cleavage system H protein OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=gcvH PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.172e-20
Identity = 47/89 (52.81%), Postives = 60/89 (67.42%), Query Frame = 1
Query:    7 VRFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 273
            V FVELPE G  +++GG   VVESVKA S+V SP+SGEV+E N  L E PG VN+    +GW  KV+ S P++L+ LMD +AY  F  E
Sbjct:   36 VVFVELPEIGREIERGGDAAVVESVKAASEVYSPVSGEVVEANDSLPEAPGQVNTDALGDGWFFKVRLSEPAELDELMDQEAYDAFVGE 124          
BLAST of EY756621 vs. ExPASy Swiss-Prot
Match: GCSH_RABIT (Glycine cleavage system H protein, mitochondrial OS=Oryctolagus cuniculus GN=GCSH PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.172e-20
Identity = 46/86 (53.49%), Postives = 61/86 (70.93%), Query Frame = 1
Query:    7 VRFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKF 264
            V +  LPE G  +K+   FG +ESVKA S++ SP+SGEV E+N  L E PGLVN S YE+GWLIK+  S+PS+L+ LM  +AY K+
Sbjct:   82 VVYCSLPEVGTKLKKQDEFGALESVKAASELYSPLSGEVTEINEALAENPGLVNKSCYEDGWLIKMTLSNPSELDELMSEEAYEKY 167          
The following BLAST results are available for this feature:
BLAST of EY756621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
GCSH_ECO248.347e-2152.27Glycine cleavage system H protein OS=Escherichia c... [more]
GCSH_SHIDS1.090e-2052.27Glycine cleavage system H protein OS=Shigella dyse... [more]
GCSH_SALPB1.090e-2052.27Glycine cleavage system H protein OS=Salmonella pa... [more]
GCSH_CHRSD1.424e-2053.33Glycine cleavage system H protein OS=Chromohalobac... [more]
GCSH_SYNR31.860e-2050.00Glycine cleavage system H protein OS=Synechococcus... [more]
GCSH_RUBXD1.860e-2055.56Glycine cleavage system H protein OS=Rubrobacter x... [more]
GCSH_MAGSM1.860e-2051.14Glycine cleavage system H protein OS=Magnetococcus... [more]
GCSH_YERE82.429e-2052.87Glycine cleavage system H protein OS=Yersinia ente... [more]
GCSH_RHORT3.172e-2052.81Glycine cleavage system H protein OS=Rhodospirillu... [more]
GCSH_RABIT3.172e-2053.49Glycine cleavage system H protein, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-010-G03-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756621 ID=EY756621; Name=EY756621; organism=Citrus sinensis; type=EST; length=428bp
CCACGCGTCCGGTTTGTGGAGCTGCCAGAAACTGGTGCCTCAGTCAAACA
AGGCGGCGGCTTCGGGGTTGTAGAAAGTGTGAAAGCAACCAGTGACGTTA
ATTCCCCCATTTCTGGTGAAGTTATTGAGGTTAACACCAAGCTCACTGAA
ACGCCTGGCTTGGTCAATTCAAGCCCATATGAAGAAGGATGGCTGATAAA
GGTGAAGCCTAGCAGCCCTTCGGATTTAGAATCCTTGATGGATCCACAGG
CTTACACGAAATTTTGCGAAGAAGAAAATGCAGCTCATTAGAATCTTCAC
ATTGTTTCATTTTCTTTTCCCAAAACATACTAATAAATCTCTTTGTTTTA
CTCGCTATGTGTGTTGTAATTCTGCATCTTCATGTAATTAAGACCCATTT
CTCCAAAAAAAAAAAAAAAAAAAAAAAA
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