CX286793

Overview
NameCX286793
Unique NameCX286793
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length492
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX286793_ssr115 microsatellite CX286793_ssr115:115..124. BLAST: Citrus ESTs to Prunus persica proteins V1
CX286793_ssr194 microsatellite CX286793_ssr194:194..203. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11617 contig Ccv1_Contig11617:151..642. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286793 vs. ExPASy Swiss-Prot
Match: LKHA4_ASPCL (Leukotriene A-4 hydrolase OS=Aspergillus clavatus GN=ACLA_079530 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.521e-13
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 1
Query:  313 VTLSDHSSVLIVFSTSPSFSALQWLSPPQTFNKLHPFVYTQCQAIHARSVFPCQDTP 483
            V L +   V I  +T+   +ALQWL+P QT NK HP++++QCQAIHARS+FPCQDTP
Sbjct:   99 VELDETIEVDISVTTTEKCTALQWLTPAQTSNKKHPYMFSQCQAIHARSIFPCQDTP 155          
BLAST of CX286793 vs. ExPASy Swiss-Prot
Match: LKHA4_AJECN (Leukotriene A-4 hydrolase OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=HCAG_07440 PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 2.521e-13
Identity = 48/152 (31.58%), Postives = 72/152 (47.37%), Query Frame = 1
Query:   46 TTMAPIDPHSFTESTHPLTTHISLSLYFDFSSSTIHAAA---ILTLAFPHAGPLSLDTRSLTIHQVXXXXXXXXXXXXXXXXXXXIKGRHLI---VTLSDHSSVLIVFSTSPSFSALQWLSPPQTFNKLHPFVYTQCQAIHARSVFPCQDTP 483
            +T  P DP++ +      TTH +++    F    +       +++L    A  + LD+  L IH V                      +  +   V LS    + I   T+   +ALQWL+P QT  + HP+++TQCQAIHARS+FPCQDTP
Sbjct:   10 STNPPRDPNTLSNYNAFRTTHTTVNFDILFEKQKLTGNVMHKLISLTNLEAREVILDSSFLNIHDVKVDGKQSKFELLPRQEPYGSALKIPLAEGVALSKTLDIDITVETTEKCTALQWLTPAQTSTQKHPYMFTQCQAIHARSIFPCQDTP 161          
BLAST of CX286793 vs. ExPASy Swiss-Prot
Match: LKHA4_YARLI (Leukotriene A-4 hydrolase OS=Yarrowia lipolytica GN=YALI0F00396g PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.299e-13
Identity = 50/148 (33.78%), Postives = 73/148 (49.32%), Query Frame = 1
Query:   64 DPHSFTESTHPLTTHISLSLYFDFSSSTIHAAAILTLAFPHAGP-LSLDTRSLTIHQVXXXXXXXXXXXXXXXXXXXIKGRHLIVTLSDHSS----VLIVFSTSPSFSALQWLSPPQTFNKLHPFVYTQCQAIHARSVFPCQDTPAAR 492
            DP + +   H   T+ ++ L  D++   +  +    L   ++   L LDT  L I +V                   I G  L +TL  +S     V I +ST+PS +ALQWL+P QT  K  P+ ++QCQAIHARSV P  DTP+ +
Sbjct:   44 DPSTLSNYEHFKPTNTTVCLKVDWTDQKLAGSVTYDLTVENSPKNLVLDTSYLDIQEVQVNGHKADFSIGERHN---IFGSPLTITLPPNSGDKLQVKIAYSTTPSCTALQWLTPEQTAGKKAPYFFSQCQAIHARSVMPAFDTPSVK 188          
BLAST of CX286793 vs. ExPASy Swiss-Prot
Match: LKHA4_RAT (Leukotriene A-4 hydrolase OS=Rattus norvegicus GN=Lta4h PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 4.299e-13
Identity = 49/135 (36.30%), Postives = 67/135 (49.63%), Query Frame = 1
Query:  100 TTHISLSLYFDFSSSTIHAAAILTLAFPHAG--PLSLDTRSLTIHQVXXXXXXXXXXXXXXXXXXXIKGR----HLIVTLSDHSSVLIV--FSTSPSFSALQWLSPPQTFNKLHPFVYTQCQAIHARSVFPCQDT 480
            T H+ L    DF+   +   A LT+         L+LDT+ LTI +V                    KG      L + LS +  V+I   F TSP  SALQWL+P QT  K HP++++Q +AIH R++ PCQDT
Sbjct:   19 TQHLHLRCSVDFARRALTGTAALTVQSQEDNLRTLTLDTKDLTIEKVVINGQEVKYTLGESQGY---KGSPMEISLPIALSKNQEVVIEISFETSPKSSALQWLTPEQTSGKQHPYLFSQWEAIHCRAILPCQDT 150          
BLAST of CX286793 vs. ExPASy Swiss-Prot
Match: LKHA4_ASPTN (Leukotriene A-4 hydrolase OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ATEG_06861 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 5.615e-13
Identity = 50/154 (32.47%), Postives = 76/154 (49.35%), Query Frame = 1
Query:   46 TTMAPIDPHSFTESTHPLTTHISLS--LYFD---FSSSTIHAAAILTLAFPHAGPLSLDTRSLTIHQVXXXXXXXXXXXXXXXXXXXIKGRHLI---VTLSDHSSVLIVFSTSPSFSALQWLSPPQTFNKLHPFVYTQCQAIHARSVFPCQDTP 483
            T   P DP++ +   + L+THI+ +  + FD      + IH    +T A   +  + LDT  + +  V                      +  +   V + +   V I   T+   +ALQWL+P QT NK HP++++QCQAIHARS+FPCQDTP
Sbjct:    4 TINPPRDPNTLSNYNNWLSTHITANFDILFDQKKLVGNVIHKLKSITNA--ESTDIVLDTSHVDVTDVKVDGKPSVWELLPPVKPYGTALKIKLDQGVKMDEIVHVDISVKTTEKCTALQWLTPAQTSNKKHPYMFSQCQAIHARSIFPCQDTP 155          
BLAST of CX286793 vs. ExPASy Swiss-Prot
Match: LKHA4_ASPOR (Leukotriene A-4 hydrolase OS=Aspergillus oryzae GN=AO090011000940 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.615e-13
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 1
Query:  313 VTLSDHSSVLIVFSTSPSFSALQWLSPPQTFNKLHPFVYTQCQAIHARSVFPCQDTP 483
            V L++   V I   T+   +ALQWL+P QT N+ HP++++QCQAIHARS+FPCQDTP
Sbjct:   99 VGLNEMVEVEISVKTTEKCTALQWLTPAQTSNRKHPYMFSQCQAIHARSIFPCQDTP 155          
BLAST of CX286793 vs. ExPASy Swiss-Prot
Match: LKHA4_NEUCR (Leukotriene A-4 hydrolase OS=Neurospora crassa GN=NCU06732 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.251e-12
Identity = 47/154 (30.52%), Postives = 79/154 (51.30%), Query Frame = 1
Query:   52 MAPI-DPHSFTESTHPLTTHISLSLYFDFSSSTIHAAAILTLAFPH---AGPLSLDTRSLTIHQVXXXXXXXXXXXXXXXXXXXIKGRHLIVTLSDHSS------VLIVFSTSPSFSALQWLSPPQTFNKLHPFVYTQCQAIHARSVFPCQDTP 483
            MAP+ DP++ +      T H + +L  DF++  +  + IL L       +  + LD+  +T++ +                     G  + + + + ++      V I  +T+   +ALQWL+P QT +K  PF+++QCQAIHARS+FPCQDTP
Sbjct:    1 MAPVRDPNTLSNYDAWRTRHTTANLKIDFTAKCLRGSVILELESQTDKASKEIVLDSSYVTVNSIKLNSAPSLWETKARTEP---NGSPVHIAVPEGAAKGEVVKVEIELATTDKCTALQWLTPAQTSDKAAPFMFSQCQAIHARSLFPCQDTP 151          
BLAST of CX286793 vs. ExPASy Swiss-Prot
Match: LKHA4_SCLS1 (Leukotriene A-4 hydrolase OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=SS1G_05513 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.134e-12
Identity = 46/151 (30.46%), Postives = 69/151 (45.70%), Query Frame = 1
Query:   58 PIDPHSFTESTHPLTTHISLSLYFDFSSSTIHAAAILTLAF---PHAGPLSLDTRSLTIHQVXXXXXXXXXXXXXXXXXXXIKGRHLIVTLSDHSS------VLIVFSTSPSFSALQWLSPPQTFNKLHPFVYTQCQAIHARSVFPCQDTP 483
            P DP++ +   +  T H    L  DF    +H    L L       +  + LDT  + + ++                     G  L V +   ++      + I  ST+   +ALQWL+P QT NK  P++++QCQAIH RS+FPCQDTP
Sbjct:    2 PRDPNTLSNYNNWRTKHTIADLAIDFKKQRVHGTVTLQLESITDKESEEIILDTSFVDVQKIAVDGSKTEEWVLKERNEPY--GSPLSVKIPGGAAKGTIIALDITISTTDKCTALQWLTPAQTSNKKFPYMFSQCQAIHNRSIFPCQDTP 150          
BLAST of CX286793 vs. ExPASy Swiss-Prot
Match: LKHA4_CHAGB (Leukotriene A-4 hydrolase OS=Chaetomium globosum GN=CHGG_07133 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.787e-12
Identity = 45/151 (29.80%), Postives = 72/151 (47.68%), Query Frame = 1
Query:   52 MAPI-DPHSFTESTHPLTTHISLSLYFDFSSSTIHAAAILTLAFPH---AGPLSLDTRSLTIHQVXXXXXXXXXXXXXXXXXXXIKGRHLIVTLSDHSSVL---IVFSTSPSFSALQWLSPPQTFNKLHPFVYTQCQAIHARSVFPCQDTP 483
            MAP+ DP++ +      T H +     DF++  +  + +L L       +  + LD+  + +  +                      R  +   +    V+   I  +T+   +ALQWL+P QT NK  PF+++QCQAIHARS+FPCQDTP
Sbjct:    1 MAPVRDPNTLSNYNEWRTKHTTADFKVDFTAKCLRGSVVLELESQTDKASKEIILDSSYVDVSAITLNSTPSQWEVRDRTGPSGSPVRVAVPNGAGKGEVVKLEIELATTDKCTALQWLTPAQTSNKKAPFMFSQCQAIHARSIFPCQDTP 151          
BLAST of CX286793 vs. ExPASy Swiss-Prot
Match: LKHA4_PHANO (Leukotriene A-4 hydrolase OS=Phaeosphaeria nodorum GN=SNOG_12761 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 6.208e-12
Identity = 44/159 (27.67%), Postives = 71/159 (44.65%), Query Frame = 1
Query:   49 TMAPIDPHSFTESTHPLTTHISLSLYFDFSSSTIHAAAILTL--------------AFPHAGPLSLDTRSLTIHQVXXXXXXXXXXXXXXXXXXXIKGRHLIVTLSDHSSVLIVFSTSPSFSALQWLSPPQTFNKLHPFVYTQCQAIHARSVFPCQDTP 483
            T  P DP++ +   + +T H SL    +F    +  + +L +              +F     + +D +S     +                    KG+ + + L+         +T+   +ALQW+ P QT NK HP++++QCQA HARSVFPCQDTP
Sbjct:    3 TRTPRDPNTLSNYHNYVTRHTSLDFEIEFERKRLVGSVVLRMESLTDAEVDVVLDSSFLDVSAIKVDRQSAEF-SIGERIEPYGSPLTIKLPAAVPKGKTVEIELT--------VATTEKCTALQWMEPAQTSNKKHPYMFSQCQANHARSVFPCQDTP 152          
The following BLAST results are available for this feature:
BLAST of CX286793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
LKHA4_ASPCL2.521e-1357.89Leukotriene A-4 hydrolase OS=Aspergillus clavatus ... [more]
LKHA4_AJECN2.521e-1331.58Leukotriene A-4 hydrolase OS=Ajellomyces capsulata... [more]
LKHA4_YARLI4.299e-1333.78Leukotriene A-4 hydrolase OS=Yarrowia lipolytica G... [more]
LKHA4_RAT4.299e-1336.30Leukotriene A-4 hydrolase OS=Rattus norvegicus GN=... [more]
LKHA4_ASPTN5.615e-1332.47Leukotriene A-4 hydrolase OS=Aspergillus terreus (... [more]
LKHA4_ASPOR5.615e-1356.14Leukotriene A-4 hydrolase OS=Aspergillus oryzae GN... [more]
LKHA4_NEUCR1.251e-1230.52Leukotriene A-4 hydrolase OS=Neurospora crassa GN=... [more]
LKHA4_SCLS12.134e-1230.46Leukotriene A-4 hydrolase OS=Sclerotinia sclerotio... [more]
LKHA4_CHAGB2.787e-1229.80Leukotriene A-4 hydrolase OS=Chaetomium globosum G... [more]
LKHA4_PHANO6.208e-1227.67Leukotriene A-4 hydrolase OS=Phaeosphaeria nodorum... [more]

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Properties
Property NameValue
Genbank descriptionC01001B01Rv Veg1 Citrus clementina cDNA clone C01001B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286793 ID=CX286793; Name=CX286793; organism=Citrus clementina; type=EST; length=492bp
ACACAGTCCTCCCTCACTGACCGGGTTAACTCAATTTCCACCATAACAAC
AATGGCACCGATCGACCCGCACTCGTTCACCGAGTCAACTCACCCGCTGA
CCACACACATCTCCCTCTCTCTCTACTTCGACTTCTCTTCATCCACCATC
CACGCCGCAGCCATCCTCACCCTCGCCTTCCCACACGCCGGCCCTCTCTC
TCTGGACACCCGCTCCCTCACCATCCACCAAGTACTCGACCCCCAAACCC
TAACCCCACTCCCCTTCACTCTCTCCCCAACCGACGACCCAATCAAAGGC
CGCCACCTCATCGTCACGCTCTCCGATCACTCCTCTGTACTCATCGTCTT
CTCCACCTCCCCCTCTTTCTCCGCCCTCCAGTGGCTCTCCCCGCCGCAGA
CCTTCAACAAACTCCACCCCTTCGTCTACACACAGTGCCAGGCGATTCAC
GCGCGGTCGGTGTTCCCGTGCCAAGACACCCCCGCGGCGCGT
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