CX286794

Overview
NameCX286794
Unique NameCX286794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10434 contig Ccv1_Contig10434:112..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RHO4_ASHGO (GTP-binding protein RHO4 OS=Ashbya gossypii GN=RHO4 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.654e-31
Identity = 66/156 (42.31%), Postives = 98/156 (62.82%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            IK V VGDGA GKT LL+SYT   FP DYVPT+F+N+  N+    G  + L LWDTAGQE+Y+RLRPLSY   D+ ++ ++  ++ S  N  + W PE++H+ P  P++LVG K DL     + +D    + +     E + + +GA  +++CS+K
Sbjct:   53 IKIVVVGDGATGKTSLLMSYTQGQFPEDYVPTIFENYVTNIEGPRGKVIELALWDTAGQEEYSRLRPLSYGDVDIVMVCYAADNRTSLTNAEELWFPEVRHFCPHAPMMLVGLKSDL-----YSLDALDRL-VDPTDAELVARKMGAFVHLQCSAK 202          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RHO3_SCHPO (GTP-binding protein rho3 OS=Schizosaccharomyces pombe GN=rho3 PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 4.526e-31
Identity = 68/154 (44.16%), Postives = 96/154 (62.34%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K V +GDGA GKT LL  +T   FP  Y PT+F+N+  ++ V+G+++ L LWDTAGQE+Y++LR LSY    V ++ F++ S+ S ENV  KW+PE+    PGV ++LV  K DLR   +  +DH  +  I    G    K I A  Y+ECS+K
Sbjct:   15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNCPGVKLVLVALKCDLRGADEEQVDH--SKIIDYEEGLAAAKKINAVRYLECSAK 166          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RACI_DICDI (Rho-related protein racI OS=Dictyostelium discoideum GN=racI PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.008e-30
Identity = 67/160 (41.88%), Postives = 100/160 (62.50%), Query Frame = 1
Query:   82 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGV--PIILVGTKLDLRDDK---QFFIDHPGAVPISTAHGEELRKLIGAPAYIECSS 546
            +IK + +GD   GKT ++++Y++ +FPT YVP+  D  S ++  N    ++G WD++   +++  RP +Y   +V IL FS+ S  S+ENVSKKWIPE++ YAP +  PIIL+GTK DLR+D+       ++    PIS   G  L K I A  Y+ECSS
Sbjct:    5 YIKLLVLGDSKTGKTTMMMTYSTGSFPTGYVPSHVDATSLDIEYNKQVCHVGFWDSSALAEFDNTRPSTYPNTNVIILCFSIDSPTSFENVSKKWIPEIRQYAPSIHTPIILLGTKCDLREDENTINLLKENNQMPPISYKQGLALSKEIKATMYLECSS 164          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RHOH_MOUSE (Rho-related GTP-binding protein RhoH OS=Mus musculus GN=Rhoh PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.317e-30
Identity = 64/154 (41.56%), Postives = 98/154 (63.64%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSS 546
            IKCV VGD AVGKT LL+ +TS TFP  Y PTV++N   +V ++G  ++LGLWDTAG + +  +RPLSY+ ADV ++ +S+ +  S+ N+  KWI E++   P  P+++V T+ D R+     +    A  I+   G+ L + + A  Y+ECS+
Sbjct:    5 IKCVLVGDSAVGKTSLLVRFTSETFPEAYKPTVYENTGVDVFMDGIQISLGLWDTAGNDAFRSIRPLSYQQADVVLMCYSVANHNSFLNLKNKWISEIRSNLPCTPVLVVATQTDQRE-----VGPHRASCINAIEGKRLAQDVRAKGYLECSA 153          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RHOH_BOVIN (Rho-related GTP-binding protein RhoH OS=Bos taurus GN=RHOH PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.720e-30
Identity = 63/154 (40.91%), Postives = 99/154 (64.29%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSS 546
            IKCV VGD AVGKT LL+ +TS TFP  Y PTV++N   +V+++G  ++LGLWDTAG + +  +RPLSY+ ADV ++ +S+ +  S+ N+  KWI E++   P  P+++V T+ D R+     +    A  ++   G+ L + + A  Y+ECS+
Sbjct:    5 IKCVLVGDSAVGKTSLLVRFTSETFPEAYKPTVYENTGVDVLMDGIQISLGLWDTAGNDAFRSIRPLSYQQADVVLMCYSVANHNSFLNLKNKWIGEVRSNLPCTPVLVVATQTDQRE-----VGPHRASCVNAIEGKRLAQDVRAKGYLECSA 153          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RHOH_HUMAN (Rho-related GTP-binding protein RhoH OS=Homo sapiens GN=RHOH PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.934e-30
Identity = 63/154 (40.91%), Postives = 99/154 (64.29%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSS 546
            IKCV VGD AVGKT LL+ +TS TFP  Y PTV++N   +V ++G  ++LGLWDTAG + +  +RPLSY+ ADV ++ +S+ +  S+ N+  KWI E++   P  P+++V T+ D R+     +    A  ++   G++L + + A  Y+ECS+
Sbjct:    5 IKCVLVGDSAVGKTSLLVRFTSETFPEAYKPTVYENTGVDVFMDGIQISLGLWDTAGNDAFRSIRPLSYQQADVVLMCYSVANHNSFLNLKNKWIGEIRSNLPCTPVLVVATQTDQRE-----MGPHRASCVNAMEGKKLAQDVRAKGYLECSA 153          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RHO2_YEAST (GTP-binding protein RHO2 OS=Saccharomyces cerevisiae GN=RHO2 PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 2.934e-30
Identity = 70/154 (45.45%), Postives = 93/154 (60.39%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPG-AVPISTAHGEELRKLIGAPAYIECSS 546
            K V +GDGA GKT LL  +T   FP  Y PTVF+N+  +  V+G  V+L LWDTAGQE+Y RLRP SY  AD+ ++ F++ +  S  N   KW  E   Y P  PI+LVG K DLR +  F  +     VPI  A  +++ + IGA  Y+ECS+
Sbjct:    9 KLVIIGDGACGKTSLLYVFTLGKFPEQYHPTVFENYVTDCRVDGIKVSLTLWDTAGQEEYERLRPFSYSKADIILIGFAVDNFESLINARTKWADEALRYCPDAPIVLVGLKKDLRQEAHFKENATDEMVPIEDA--KQVARAIGAKKYMECSA 160          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RHO3_SCHCO (GTP-binding protein Rho3 OS=Schizophyllum commune GN=RHO3 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.233e-28
Identity = 67/156 (42.95%), Postives = 90/156 (57.69%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K V  GDGA GKT LL  +T   F   Y PTVF+N+  ++ ++   V L LWDTAGQE+++RLR LSY    V ++ FS+ +  S ENV  KW+ E+  Y PGV ++LV +K DLRDD      +   G        G  + + I A  Y+ECSSK
Sbjct:   19 KVVVCGDGACGKTSLLNVFTRGFFTQVYEPTVFENYVHDLYIDDQLVELSLWDTAGQEEFDRLRSLSYAETHVIMICFSVDNPTSLENVESKWLDEILEYCPGVKLVLVDSKCDLRDDPAVLDRLQRYGTHTDQYEEGLGVARRIRASRYLECSSK 174          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RND3_RAT (Rho-related GTP-binding protein RhoE OS=Rattus norvegicus GN=Rnd3 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.610e-28
Identity = 66/171 (38.60%), Postives = 100/171 (58.48%), Query Frame = 1
Query:   46 LS*KKIKMSASRFIKC--VTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPISTAHGEELRKLIGAPAYIECSS 546
            LS K I M  ++ +KC  V VGD   GKT LL  +  + FP +YVPTVF+N++A+  ++   + L LWDT+G   Y+ +RPLSY  +D  ++ F +    + ++V KKW  E++ + P   ++LVG K DLR D    ++  +    P+S   G  + K IGA  YIECS+
Sbjct:   10 LSSKSI-MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 179          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RND3_PONAB (Rho-related GTP-binding protein RhoE OS=Pongo abelii GN=RND3 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.610e-28
Identity = 66/171 (38.60%), Postives = 100/171 (58.48%), Query Frame = 1
Query:   46 LS*KKIKMSASRFIKC--VTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPISTAHGEELRKLIGAPAYIECSS 546
            LS K I M  ++ +KC  V VGD   GKT LL  +  + FP +YVPTVF+N++A+  ++   + L LWDT+G   Y+ +RPLSY  +D  ++ F +    + ++V KKW  E++ + P   ++LVG K DLR D    ++  +    P+S   G  + K IGA  YIECS+
Sbjct:   10 LSSKSI-MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 179          
The following BLAST results are available for this feature:
BLAST of CX286794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHO4_ASHGO2.654e-3142.31GTP-binding protein RHO4 OS=Ashbya gossypii GN=RHO... [more]
RHO3_SCHPO4.526e-3144.16GTP-binding protein rho3 OS=Schizosaccharomyces po... [more]
RACI_DICDI1.008e-3041.88Rho-related protein racI OS=Dictyostelium discoide... [more]
RHOH_MOUSE1.317e-3041.56Rho-related GTP-binding protein RhoH OS=Mus muscul... [more]
RHOH_BOVIN1.720e-3040.91Rho-related GTP-binding protein RhoH OS=Bos taurus... [more]
RHOH_HUMAN2.934e-3040.91Rho-related GTP-binding protein RhoH OS=Homo sapie... [more]
RHO2_YEAST2.934e-3045.45GTP-binding protein RHO2 OS=Saccharomyces cerevisi... [more]
RHO3_SCHCO1.233e-2842.95GTP-binding protein Rho3 OS=Schizophyllum commune ... [more]
RND3_RAT1.610e-2838.60Rho-related GTP-binding protein RhoE OS=Rattus nor... [more]
RND3_PONAB1.610e-2838.60Rho-related GTP-binding protein RhoE OS=Pongo abel... [more]

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Properties
Property NameValue
Genbank descriptionC01001B03Rv Veg1 Citrus clementina cDNA clone C01001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286794 ID=CX286794; Name=CX286794; organism=Citrus clementina; type=EST; length=551bp
TTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAAAAGCCACTGTC
TTAAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAGTGCGTGACGG
TTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTCTTACACCAGC
AACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATAATTTCAGTGC
AAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTATGGGATACTG
CTGGACAAGAGGATTATAACAGATTAAGACCTTTAAGTTACCGTGGTGCA
GATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAAGTTATGAAAA
TGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCTGGTGTGC
CAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGATAAGCAGTTC
TTCATTGACCATCCAGGTGCCGTGCCCATTAGTACAGCTCACGGGGAGGA
GCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGCAGTTCAAAAA
C
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