CX286794

Overview
NameCX286794
Unique NameCX286794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10434 contig Ccv1_Contig10434:112..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RND3_MOUSE (Rho-related GTP-binding protein RhoE OS=Mus musculus GN=Rnd3 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.610e-28
Identity = 66/171 (38.60%), Postives = 100/171 (58.48%), Query Frame = 1
Query:   46 LS*KKIKMSASRFIKC--VTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPISTAHGEELRKLIGAPAYIECSS 546
            LS K I M  ++ +KC  V VGD   GKT LL  +  + FP +YVPTVF+N++A+  ++   + L LWDT+G   Y+ +RPLSY  +D  ++ F +    + ++V KKW  E++ + P   ++LVG K DLR D    ++  +    P+S   G  + K IGA  YIECS+
Sbjct:   10 LSSKSI-MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 179          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RND3_HUMAN (Rho-related GTP-binding protein RhoE OS=Homo sapiens GN=RND3 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.610e-28
Identity = 66/171 (38.60%), Postives = 100/171 (58.48%), Query Frame = 1
Query:   46 LS*KKIKMSASRFIKC--VTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPISTAHGEELRKLIGAPAYIECSS 546
            LS K I M  ++ +KC  V VGD   GKT LL  +  + FP +YVPTVF+N++A+  ++   + L LWDT+G   Y+ +RPLSY  +D  ++ F +    + ++V KKW  E++ + P   ++LVG K DLR D    ++  +    P+S   G  + K IGA  YIECS+
Sbjct:   10 LSSKSI-MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 179          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RACN_DICDI (Rho-related protein racN OS=Dictyostelium discoideum GN=racN PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.103e-28
Identity = 66/161 (40.99%), Postives = 95/161 (59.01%), Query Frame = 1
Query:   79 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD-----DKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSS 546
            + IK V +GD  +GKT LL++     FP +Y+PT+FDN    + +N   + +G WDT G E+Y R  PLSY   ++F++ FS+ S+ S+ N    W+PE+  + P VPIILVGTK DLR+     DK  F+ +          G E++  I A AY+ECSS
Sbjct:    4 KIIKAVVLGDVTIGKTSLLVTKKIG-FPLEYIPTIFDNHYFEIKINDQIMRIGCWDTGGGEEYPR--PLSYPQTNLFLILFSISSRNSFNNCETYWLPEVTKFLPSVPIILVGTKTDLRNCDDYKDKSTFVTY--------EEGLEMKDKINASAYLECSS 153          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RND3_PIG (Rho-related GTP-binding protein RhoE OS=Sus scrofa GN=RND3 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.586e-28
Identity = 65/171 (38.01%), Postives = 100/171 (58.48%), Query Frame = 1
Query:   46 LS*KKIKMSASRFIKC--VTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPISTAHGEELRKLIGAPAYIECSS 546
            LS K I M  ++ +KC  V VGD   G+T LL  +  + FP +YVPTVF+N++A+  ++   + L LWDT+G   Y+ +RPLSY  +D  ++ F +    + ++V KKW  E++ + P   ++LVG K DLR D    ++  +    P+S   G  + K IGA  YIECS+
Sbjct:   10 LSSKSI-MDPNQNVKCKIVVVGDSQCGRTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 179          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RHO3_ASHGO (GTP-binding protein RHO3 OS=Ashbya gossypii GN=RHO3 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.684e-28
Identity = 68/169 (40.24%), Postives = 95/169 (56.21%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDH---PGAVP------------ISTAHGEELRKLIGAPAYIECSSK 549
            K V +GDGA GKT LL  +T   FP  Y PTVF+N+  ++ V+   + L LWDTAGQE+++RLR LSY      +L FS+ S+ S ENV  KW+ E+  +  GV ++LV  K DLR   ++  +    PG++             I    G  + K IGA  Y+ECS+K
Sbjct:   17 KIVILGDGACGKTSLLNVFTRGYFPKVYEPTVFENYIHDIFVDNQHITLSLWDTAGQEEFDRLRSLSYSDTHTIMLCFSVDSRDSLENVKNKWVSEIADHCEGVKLVLVALKCDLRSSDEYGNESAITPGSIQNQKYNGGGGNGLIPYDEGLAMAKQIGALRYLECSAK 185          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RND2_MOUSE (Rho-related GTP-binding protein RhoN OS=Mus musculus GN=Rnd2 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.325e-27
Identity = 56/156 (35.90%), Postives = 91/156 (58.33%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K V VGD   GKT LL  +  + +P  YVPTVF+N++A+  ++   + L +WDT+G   Y+ +RPL+Y  +D  ++ F +    + ++V KKW  E + + P   ++LVG KLD+R D      +     +P++   G  L K +GA +Y+ECSS+
Sbjct:    9 KIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR 164          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RND2_HUMAN (Rho-related GTP-binding protein RhoN OS=Homo sapiens GN=RND2 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 2.325e-27
Identity = 56/156 (35.90%), Postives = 91/156 (58.33%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K V VGD   GKT LL  +  + +P  YVPTVF+N++A+  ++   + L +WDT+G   Y+ +RPL+Y  +D  ++ F +    + ++V KKW  E + + P   ++LVG KLD+R D      +     +P++   G  L K +GA +Y+ECSS+
Sbjct:    9 KIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR 164          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RHO3_YEAST (GTP-binding protein RHO3 OS=Saccharomyces cerevisiae GN=RHO3 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.154e-26
Identity = 70/177 (39.55%), Postives = 94/177 (53.11%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD---------------DKQFFIDH--------PGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K V +GDGA GKT LL  +T   FP  Y PTVF+N+  ++ V+   + L LWDTAGQE+++RLR LSY      +L FS+ S+ S ENV  KW+ E+  +  GV ++LV  K DLR+               D     D+         G   IS   G  + K IGA  Y+ECS+K
Sbjct:   18 KIVILGDGACGKTSLLNVFTRGYFPEVYEPTVFENYIHDIFVDSKHITLSLWDTAGQEEFDRLRSLSYSDTQCIMLCFSIDSRDSLENVQNKWVGEITDHCEGVKLVLVALKCDLRNNENESNAITPNNIQQDNSVSNDNGNNINSTSNGKNLISYEEGLAMAKKIGALRYLECSAK 194          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RND1_MOUSE (Rho-related GTP-binding protein Rho6 OS=Mus musculus GN=Rnd1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.141e-24
Identity = 57/155 (36.77%), Postives = 83/155 (53.55%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPISTAHGEELRKLIGAPAYIECSS 546
            K V VGD   GKT +L     + +P  YVPTVF+N++A +      V L LWDT+G   Y+ +RPL Y  +D  +L F +    + ++  KKW  E+  Y P   ++L+G K DLR D    ++  H    PIS   G  + K +GA  Y+E S+
Sbjct:   15 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETMDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 169          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RND1_HUMAN (Rho-related GTP-binding protein Rho6 OS=Homo sapiens GN=RND1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.141e-24
Identity = 57/155 (36.77%), Postives = 83/155 (53.55%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPISTAHGEELRKLIGAPAYIECSS 546
            K V VGD   GKT +L     + +P  YVPTVF+N++A +      V L LWDT+G   Y+ +RPL Y  +D  +L F +    + ++  KKW  E+  Y P   ++L+G K DLR D    ++  H    PIS   G  + K +GA  Y+E S+
Sbjct:   15 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 169          
The following BLAST results are available for this feature:
BLAST of CX286794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RND3_MOUSE1.610e-2838.60Rho-related GTP-binding protein RhoE OS=Mus muscul... [more]
RND3_HUMAN1.610e-2838.60Rho-related GTP-binding protein RhoE OS=Homo sapie... [more]
RACN_DICDI2.103e-2840.99Rho-related protein racN OS=Dictyostelium discoide... [more]
RND3_PIG3.586e-2838.01Rho-related GTP-binding protein RhoE OS=Sus scrofa... [more]
RHO3_ASHGO4.684e-2840.24GTP-binding protein RHO3 OS=Ashbya gossypii GN=RHO... [more]
RND2_MOUSE2.325e-2735.90Rho-related GTP-binding protein RhoN OS=Mus muscul... [more]
RND2_HUMAN2.325e-2735.90Rho-related GTP-binding protein RhoN OS=Homo sapie... [more]
RHO3_YEAST1.154e-2639.55GTP-binding protein RHO3 OS=Saccharomyces cerevisi... [more]
RND1_MOUSE9.141e-2436.77Rho-related GTP-binding protein Rho6 OS=Mus muscul... [more]
RND1_HUMAN9.141e-2436.77Rho-related GTP-binding protein Rho6 OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionC01001B03Rv Veg1 Citrus clementina cDNA clone C01001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286794 ID=CX286794; Name=CX286794; organism=Citrus clementina; type=EST; length=551bp
TTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAAAAGCCACTGTC
TTAAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAGTGCGTGACGG
TTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTCTTACACCAGC
AACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATAATTTCAGTGC
AAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTATGGGATACTG
CTGGACAAGAGGATTATAACAGATTAAGACCTTTAAGTTACCGTGGTGCA
GATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAAGTTATGAAAA
TGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCTGGTGTGC
CAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGATAAGCAGTTC
TTCATTGACCATCCAGGTGCCGTGCCCATTAGTACAGCTCACGGGGAGGA
GCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGCAGTTCAAAAA
C
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