CX286794

Overview
NameCX286794
Unique NameCX286794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RND1_BOVIN (Rho-related GTP-binding protein Rho6 OS=Bos taurus GN=RND1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.141e-24
Identity = 57/155 (36.77%), Postives = 83/155 (53.55%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPISTAHGEELRKLIGAPAYIECSS 546
            K V VGD   GKT +L     + +P  YVPTVF+N++A +      V L LWDT+G   Y+ +RPL Y  +D  +L F +    + ++  KKW  E+  Y P   ++L+G K DLR D    ++  H    PIS   G  + K +GA  Y+E S+
Sbjct:   15 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 169          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.330e-19
Identity = 59/157 (37.58%), Postives = 87/157 (55.41%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            IK + VGD  VGK+CLL+ +T + F + ++ T+  +F    V V+G  V L +WDTAGQE +  +    YRGA   IL + +  +AS+ NV + W+  + +H +  V  ILVG KLDL +DK+          +S A G+ L    G   Y E S+K
Sbjct:   14 IKLLLVGDSGVGKSCLLLRFTDDMFTSSFITTIGIDFKIKKVDVDGKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNV-RNWMRNIEQHASDNVNKILVGNKLDLAEDKRV---------VSIARGQALADEFGFRFY-ETSAK 159          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RHBT1_HUMAN (Rho-related BTB domain-containing protein 1 OS=Homo sapiens GN=RHOBTB1 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 5.191e-19
Identity = 66/174 (37.93%), Postives = 91/174 (52.30%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDY------VPTVF--DNFS--------ANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID---HPGAVPISTA------HGEELRKLIGAPAY 531
            IKCV VGD AVGKT L+ +   NT  T Y      VPTV+  D +         +  VV+  +V+L LWDT G  D+++ R  +Y  +DV +L FS+ +  S  +V   W PE+KH+ P  P+ILVG +LDLR      ++    P A PI          G E+ K +G P Y
Sbjct:   15 IKCVVVGDNAVGKTRLICARACNTTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDEVSVSLRLWDTFG--DHHKDRRFAYGRSDVVVLCFSIANPNSLNHVKSMWYPEIKHFCPRTPVILVGCQLDLRYADLEAVNRARRPLARPIKRGDILPPEKGREVAKELGLPYY 186          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RASC_DICDI (Ras-like protein rasC OS=Dictyostelium discoideum GN=rasC PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.510e-18
Identity = 56/160 (35.00%), Postives = 90/160 (56.25%), Query Frame = 1
Query:   76 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            S+ +K V VGDG VGK+ L I  T N F  +Y PT+ +++   V ++     L + DTAGQE+Y+ +R    R    F++ +S+IS+AS+E V+  ++ I  +K  +   PI+++G K DL D  +          +    G+EL K  GAP ++E S+K
Sbjct:    2 SKLLKLVIVGDGGVGKSALTIQLTQNQFIAEYDPTIENSYRKQVNIDEEVYMLDILDTAGQEEYSAMRDQYIRSGRGFLIVYSIISRASFEAVTTFREQILRVKDLST-YPIVIIGNKADLPDKDR---------KVPPMEGKELAKSFGAP-FLETSAK 150          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RHBT2_MOUSE (Rho-related BTB domain-containing protein 2 OS=Mus musculus GN=Rhobtb2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.576e-18
Identity = 65/174 (37.36%), Postives = 90/174 (51.72%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDY------VPTVF--DNFS--------ANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID---HPGAVPIS------TAHGEELRKLIGAPAY 531
            IKCV VGD AVGKT L+ +   N   T Y      VPTV+  D +         +  VV+  +V+L LWDT G  D+++ R  +Y  +DV +L FS+ +  S  +V   W PE+KH+ P  P+ILVG +LDLR      ++    P A PI          G E+ K +G P Y
Sbjct:   15 IKCVVVGDNAVGKTRLICARACNATLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDDVSVSLRLWDTFG--DHHKDRRFAYGRSDVVVLCFSIANPNSLHHVKTMWYPEIKHFCPRAPVILVGCQLDLRYADLEAVNRARRPLARPIKPNEILPPEKGREVAKELGIPYY 186          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RHBT2_HUMAN (Rho-related BTB domain-containing protein 2 OS=Homo sapiens GN=RHOBTB2 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 2.576e-18
Identity = 65/174 (37.36%), Postives = 90/174 (51.72%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDY------VPTVF--DNFS--------ANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID---HPGAVPIS------TAHGEELRKLIGAPAY 531
            IKCV VGD AVGKT L+ +   N   T Y      VPTV+  D +         +  VV+  +V+L LWDT G  D+++ R  +Y  +DV +L FS+ +  S  +V   W PE+KH+ P  P+ILVG +LDLR      ++    P A PI          G E+ K +G P Y
Sbjct:   15 IKCVVVGDNAVGKTRLICARACNATLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDDVSVSLRLWDTFG--DHHKDRRFAYGRSDVVVLCFSIANPNSLHHVKTMWYPEIKHFCPRAPVILVGCQLDLRYADLEAVNRARRPLARPIKPNEILPPEKGREVAKELGIPYY 186          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RABG2_DICDI (Ras-related protein RabG2 OS=Dictyostelium discoideum GN=rabG2 PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 4.394e-18
Identity = 51/128 (39.84%), Postives = 74/128 (57.81%), Query Frame = 1
Query:   67 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGTKLDLRDDK 444
            MS     K + +GD AVGKT LL+ +  N+F  T    T  D  + N+V++G T NL +WDTAGQE +  +    YRGA   ++ + +  + +Y NV + W+ E++ YA  GV  +LVG K DL D K
Sbjct:    1 MSDPDVFKILLIGDSAVGKTSLLLRFADNSFQETSVNMTSVDYKNKNIVIDGRTFNLQIWDTAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNV-RLWMQEIQRYAVLGVSRVLVGNKCDLEDRK 127          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAS3_RHIRA (Ras-like protein 3 OS=Rhizomucor racemosus GN=RAS3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.495e-18
Identity = 57/164 (34.76%), Postives = 87/164 (53.05%), Query Frame = 1
Query:   64 KMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSK--KWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K S  R  K V VG G VGK+ L I +  + F  +Y PT+ D++    V++  T  L + DTAGQE+Y+ +R    R  + F+L +S+ S+ S+E V+   + I  +K      P++LVG K DL  D+Q          +S+  G +L K  G P + E S+K
Sbjct:    3 KASFLREYKIVIVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCVIDDETALLDVLDTAGQEEYSAMREQYMRNGEGFVLVYSITSRLSFEEVNTFYQQIRRVKD-RDSFPMVLVGNKCDLEGDRQ----------VSSQEGRDLAKSFGCP-FSETSAK 154          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RHBT1_MOUSE (Rho-related BTB domain-containing protein 1 OS=Mus musculus GN=Rhobtb1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.789e-18
Identity = 63/174 (36.21%), Postives = 90/174 (51.72%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDY------VPTVF--DNFS--------ANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID---HPGAVPISTA------HGEELRKLIGAPAY 531
            IKCV VGD AVGKT L+ +   NT  T Y      VPTV+  D +         +  VV+  +++L LWDT G  D+++ R  +Y  +DV +L FS+ +  S  +V   W  E+KH+ P  P++LVG +LDLR      ++    P A PI          G E+ K +G P Y
Sbjct:   15 IKCVVVGDNAVGKTRLICARACNTTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDEVSISLRLWDTFG--DHHKDRRFAYGRSDVVVLCFSIANPNSLNHVKTMWYQEIKHFCPRTPVVLVGCQLDLRYADLEAVNRARRPLARPIKRGDILPPEKGREVAKELGIPYY 186          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB15_RAT (Ras-related protein Rab-15 OS=Rattus norvegicus GN=Rab15 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.670e-17
Identity = 50/150 (33.33%), Postives = 78/150 (52.00%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAY 531
            + + +GD  VGKTCLL  +T N F + ++ T+  +F    + V+G  V + +WDTAGQE Y  +    YR A    L + + S+ SY+++  KW+ ++  YAP GV  IL+G K D    +Q          +    G++L K  G   Y
Sbjct:   10 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHI-MKWVSDVDEYAPEGVQKILIGNKADEEQKRQ----------VGREQGQQLAKEYGMDFY 148          
The following BLAST results are available for this feature:
BLAST of CX286794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RND1_BOVIN9.141e-2436.77Rho-related GTP-binding protein Rho6 OS=Bos taurus... [more]
YPTV2_VOLCA2.330e-1937.58GTP-binding protein yptV2 OS=Volvox carteri GN=YPT... [more]
RHBT1_HUMAN5.191e-1937.93Rho-related BTB domain-containing protein 1 OS=Hom... [more]
RASC_DICDI1.510e-1835.00Ras-like protein rasC OS=Dictyostelium discoideum ... [more]
RHBT2_MOUSE2.576e-1837.36Rho-related BTB domain-containing protein 2 OS=Mus... [more]
RHBT2_HUMAN2.576e-1837.36Rho-related BTB domain-containing protein 2 OS=Hom... [more]
RABG2_DICDI4.394e-1839.84Ras-related protein RabG2 OS=Dictyostelium discoid... [more]
RAS3_RHIRA7.495e-1834.76Ras-like protein 3 OS=Rhizomucor racemosus GN=RAS3... [more]
RHBT1_MOUSE9.789e-1836.21Rho-related BTB domain-containing protein 1 OS=Mus... [more]
RAB15_RAT1.670e-1733.33Ras-related protein Rab-15 OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionC01001B03Rv Veg1 Citrus clementina cDNA clone C01001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286794 ID=CX286794; Name=CX286794; organism=Citrus clementina; type=EST; length=551bp
TTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAAAAGCCACTGTC
TTAAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAGTGCGTGACGG
TTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTCTTACACCAGC
AACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATAATTTCAGTGC
AAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTATGGGATACTG
CTGGACAAGAGGATTATAACAGATTAAGACCTTTAAGTTACCGTGGTGCA
GATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAAGTTATGAAAA
TGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCTGGTGTGC
CAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGATAAGCAGTTC
TTCATTGACCATCCAGGTGCCGTGCCCATTAGTACAGCTCACGGGGAGGA
GCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGCAGTTCAAAAA
C
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