CX286794

Overview
NameCX286794
Unique NameCX286794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB15_MOUSE (Ras-related protein Rab-15 OS=Mus musculus GN=Rab15 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.670e-17
Identity = 50/150 (33.33%), Postives = 78/150 (52.00%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAY 531
            + + +GD  VGKTCLL  +T N F + ++ T+  +F    + V+G  V + +WDTAGQE Y  +    YR A    L + + S+ SY+++  KW+ ++  YAP GV  IL+G K D    +Q          +    G++L K  G   Y
Sbjct:   10 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIDVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHI-MKWVSDVDEYAPEGVQKILIGNKADEEQKRQ----------VGREQGQQLAKEYGMDFY 148          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB15_HUMAN (Ras-related protein Rab-15 OS=Homo sapiens GN=RAB15 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.670e-17
Identity = 50/150 (33.33%), Postives = 78/150 (52.00%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAY 531
            + + +GD  VGKTCLL  +T N F + ++ T+  +F    + V+G  V + +WDTAGQE Y  +    YR A    L + + S+ SY+++  KW+ ++  YAP GV  IL+G K D    +Q          +    G++L K  G   Y
Sbjct:   10 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHI-MKWVSDVDEYAPEGVQKILIGNKADEEQKRQ----------VGREQGQQLAKEYGMDFY 148          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: YPT6_YEAST (GTP-binding protein YPT6 OS=Saccharomyces cerevisiae GN=YPT6 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.181e-17
Identity = 56/157 (35.67%), Postives = 85/157 (54.14%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIIL--VGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K V +G+  VGKT L+  +  +TF   Y  T+  D  S  + ++  T+ L LWDTAGQE +  L P   R + V I+ + +  + S+E +  KWI ++K+      +IL  VG K DL D++Q          IST  GE+  KL+GA  ++E S+K
Sbjct:   12 KIVFLGEQGVGKTSLITRFMYDTFDDHYQATIGIDFLSKTMYLDDKTIRLQLWDTAGQERFRSLIPSYIRDSRVAIIVYDITKRKSFEYID-KWIEDVKNERGDENVILCIVGNKSDLSDERQ----------ISTEEGEKKAKLLGAKIFMETSTK 157          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.181e-17
Identity = 53/157 (33.76%), Postives = 84/157 (53.50%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            IK + +GD  VGK+CLL+ +  + F   ++ T+  +F    + +    V L +WDTAGQE +  +    YRGA   +L + +  + S+ N+ + W   ++ YA  GV +ILVG K DL D+K+          +ST  G+ L    G P ++E SSK
Sbjct:   12 IKLLLIGDSGVGKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNI-ENWYQNVQSYANEGVELILVGNKCDL-DEKRV---------VSTEQGQALADKFGIP-FLEASSK 156          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RASG_DICDI (Ras-like protein rasG OS=Dictyostelium discoideum GN=rasG PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.181e-17
Identity = 53/156 (33.97%), Postives = 87/156 (55.77%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K V VG G VGK+ L I    N F  +Y PT+ D++   V ++  T  L + DTAGQE+Y+ +R    R    F+  +S+ S++S++ ++  ++ I  +K     VP+I+VG K DL  D+Q          ++T  G++L K  G+P ++E S+K
Sbjct:    5 KLVIVGGGGVGKSALTIQLIQNHFIDEYDPTIEDSYRKQVTIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFDEIASFREQILRVKD-KDRVPMIVVGNKCDLESDRQ----------VTTGEGQDLAKSFGSP-FLETSAK 148          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAS2_PHYPO (Ras-like protein 2 OS=Physarum polycephalum GN=RAS-2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.181e-17
Identity = 53/156 (33.97%), Postives = 86/156 (55.13%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE--NVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K V VG G VGK+ L I    N F  +Y PT+ D++   VV++  T  L + DTAGQE+Y+ +R    R    F++ +S+ S++S++  N  ++ I  +K     VP++L G K DL  ++Q          ++T  G+EL +  G P ++E S+K
Sbjct:    7 KLVIVGGGGVGKSALTIQLIQNHFIDEYDPTIEDSYRKQVVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFVMVYSITSRSSFDEINAFREQILRVKD-KDTVPMVLAGNKCDLASERQ----------VTTNEGQELARAFGCP-FVETSAK 150          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.848e-17
Identity = 46/121 (38.02%), Postives = 70/121 (57.85%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDK 444
            K + +GD  VGK+CLL+ +  +T+   Y+ T+  +F      + G TV L +WDTAGQE +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA  GV  +LVG K D+ D K
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNV-KQWLQEIDRYAVEGVNRLLVGNKSDMVDKK 129          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB1B_MOUSE (Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.848e-17
Identity = 51/156 (32.69%), Postives = 82/156 (52.56%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K + +GD  VGK+CLL+ +  +T+   Y+ T+  +F    + ++G T+ L +WDTAGQE +  +    YRGA   I+ + +  + SY NV K+W+ E+  YA   V  +LVG K DL   K           +     +E    +G P ++E S+K
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNKSDLTTKK----------VVDNTTAKEFADSLGVP-FLETSAK 153          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.848e-17
Identity = 51/156 (32.69%), Postives = 82/156 (52.56%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K + +GD  VGK+CLL+ +  +T+   Y+ T+  +F    + ++G T+ L +WDTAGQE +  +    YRGA   I+ + +  + SY NV K+W+ E+  YA   V  +LVG K DL   K           +     +E    +G P ++E S+K
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDRESYANV-KQWLQEIDRYASENVNKLLVGNKSDLTTKK----------VVDNTTAKEFADSLGIP-FLETSAK 153          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 2.848e-17
Identity = 53/156 (33.97%), Postives = 85/156 (54.49%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K + +GD  VGK+CLL+ +  +T+   Y+ T+  +F    + ++G T+ L +WDTAGQE +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL   K         V  +TA  +E    +G P ++E S+K
Sbjct:   13 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKK--------VVDYTTA--KEFADSLGIP-FLETSAK 156          
The following BLAST results are available for this feature:
BLAST of CX286794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB15_MOUSE1.670e-1733.33Ras-related protein Rab-15 OS=Mus musculus GN=Rab1... [more]
RAB15_HUMAN1.670e-1733.33Ras-related protein Rab-15 OS=Homo sapiens GN=RAB1... [more]
YPT6_YEAST2.181e-1735.67GTP-binding protein YPT6 OS=Saccharomyces cerevisi... [more]
RYL1_YARLI2.181e-1733.76Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
RASG_DICDI2.181e-1733.97Ras-like protein rasG OS=Dictyostelium discoideum ... [more]
RAS2_PHYPO2.181e-1733.97Ras-like protein 2 OS=Physarum polycephalum GN=RAS... [more]
YPT1_SCHPO2.848e-1738.02GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]
RAB1B_MOUSE2.848e-1732.69Ras-related protein Rab-1B OS=Mus musculus GN=Rab1... [more]
RAB1B_MACFA2.848e-1732.69Ras-related protein Rab-1B OS=Macaca fascicularis ... [more]
RAB1A_PIG2.848e-1733.97Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]

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Properties
Property NameValue
Genbank descriptionC01001B03Rv Veg1 Citrus clementina cDNA clone C01001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286794 ID=CX286794; Name=CX286794; organism=Citrus clementina; type=EST; length=551bp
TTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAAAAGCCACTGTC
TTAAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAGTGCGTGACGG
TTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTCTTACACCAGC
AACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATAATTTCAGTGC
AAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTATGGGATACTG
CTGGACAAGAGGATTATAACAGATTAAGACCTTTAAGTTACCGTGGTGCA
GATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAAGTTATGAAAA
TGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCTGGTGTGC
CAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGATAAGCAGTTC
TTCATTGACCATCCAGGTGCCGTGCCCATTAGTACAGCTCACGGGGAGGA
GCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGCAGTTCAAAAA
C
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