CX286794

Overview
NameCX286794
Unique NameCX286794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 3.720e-17
Identity = 43/121 (35.54%), Postives = 72/121 (59.50%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI-ILVGTKLDLRDDK 444
            K + +G+  VGK+CLL+ ++ +T+  DY+ T+  +F    V ++G TV L +WDTAGQE +  +    YRG+   I+ + +  + S+  V K W+ E+  YA    + +LVG K DL+D +
Sbjct:   10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKDKR 129          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: YPT1_NEUCR (GTP-binding protein ypt1 OS=Neurospora crassa GN=ypt-1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.720e-17
Identity = 45/121 (37.19%), Postives = 70/121 (57.85%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDK 444
            K + +GD  VGK+CLL+ +  +T+   Y+ T+  +F    + ++G TV L +WDTAGQE +  +    YRGA    + + +    S+ NV K+W+ E+  YA  GV  +LVG K D+ D K
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGICVVYDVTDMDSFNNV-KQWLQEIDRYATEGVNKLLVGNKSDMTDKK 129          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 3.720e-17
Identity = 53/156 (33.97%), Postives = 87/156 (55.77%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K + +GD  VGK+CLL+ ++ +++   Y+ T+  +F    V  +G T+ L +WDTAGQE +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL +++        A+P  TA  +     IG P ++E S+K
Sbjct:   10 KLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNV-KQWLSEIDRYASDNVNKLLVGNKSDLTENR--------AIPYETA--KAFADEIGIP-FMETSAK 153          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.720e-17
Identity = 53/156 (33.97%), Postives = 85/156 (54.49%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K + +GD  VGK+CLL+ +  +T+   Y+ T+  +F    + ++G T+ L +WDTAGQE +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL   K         V  +TA  +E    +G P ++E S+K
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKK--------VVDYTTA--KEFADSLGIP-FLETSAK 153          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB1B_RAT (Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.720e-17
Identity = 51/156 (32.69%), Postives = 82/156 (52.56%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K + +GD  VGK+CLL+ +  +T+   Y+ T+  +F    + ++G T+ L +WDTAGQE +  +    YRGA   I+ + +  + SY NV K+W+ E+  YA   V  +LVG K DL   K           +     +E    +G P ++E S+K
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNKSDLTTKK----------VVDNTTAKEFADSLGVP-FLETSAK 153          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB1B_PONAB (Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.720e-17
Identity = 51/156 (32.69%), Postives = 82/156 (52.56%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K + +GD  VGK+CLL+ +  +T+   Y+ T+  +F    + ++G T+ L +WDTAGQE +  +    YRGA   I+ + +  + SY NV K+W+ E+  YA   V  +LVG K DL   K           +     +E    +G P ++E S+K
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNKSDLTTKK----------VVDNTTAKEFADSLGIP-FLETSAK 153          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB1B_HUMAN (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.720e-17
Identity = 51/156 (32.69%), Postives = 82/156 (52.56%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K + +GD  VGK+CLL+ +  +T+   Y+ T+  +F    + ++G T+ L +WDTAGQE +  +    YRGA   I+ + +  + SY NV K+W+ E+  YA   V  +LVG K DL   K           +     +E    +G P ++E S+K
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNKSDLTTKK----------VVDNTTAKEFADSLGIP-FLETSAK 153          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB1B_BOVIN (Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.720e-17
Identity = 51/156 (32.69%), Postives = 82/156 (52.56%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K + +GD  VGK+CLL+ +  +T+   Y+ T+  +F    + ++G T+ L +WDTAGQE +  +    YRGA   I+ + +  + SY NV K+W+ E+  YA   V  +LVG K DL   K           +     +E    +G P ++E S+K
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNKSDLTTKK----------VVDNTTAKEFADSLGIP-FLETSAK 153          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 3.720e-17
Identity = 53/156 (33.97%), Postives = 85/156 (54.49%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K + +GD  VGK+CLL+ +  +T+   Y+ T+  +F    + ++G T+ L +WDTAGQE +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL   K         V  +TA  +E    +G P ++E S+K
Sbjct:   13 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKK--------VVDYTTA--KEFADSLGIP-FLETSAK 156          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 3.720e-17
Identity = 53/156 (33.97%), Postives = 85/156 (54.49%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K + +GD  VGK+CLL+ +  +T+   Y+ T+  +F    + ++G T+ L +WDTAGQE +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL   K         V  +TA  +E    +G P ++E S+K
Sbjct:   13 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKK--------VVDYTTA--KEFADSLGIP-FLETSAK 156          
The following BLAST results are available for this feature:
BLAST of CX286794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT1_YEAST3.720e-1735.54GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
YPT1_NEUCR3.720e-1737.19GTP-binding protein ypt1 OS=Neurospora crassa GN=y... [more]
RBD2A_ARATH3.720e-1733.97Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
RAB1_DISOM3.720e-1733.97Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]
RAB1B_RAT3.720e-1732.69Ras-related protein Rab-1B OS=Rattus norvegicus GN... [more]
RAB1B_PONAB3.720e-1732.69Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1... [more]
RAB1B_HUMAN3.720e-1732.69Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1... [more]
RAB1B_BOVIN3.720e-1732.69Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B ... [more]
RAB1A_RAT3.720e-1733.97Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_MOUSE3.720e-1733.97Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]

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Properties
Property NameValue
Genbank descriptionC01001B03Rv Veg1 Citrus clementina cDNA clone C01001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286794 ID=CX286794; Name=CX286794; organism=Citrus clementina; type=EST; length=551bp
TTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAAAAGCCACTGTC
TTAAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAGTGCGTGACGG
TTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTCTTACACCAGC
AACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATAATTTCAGTGC
AAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTATGGGATACTG
CTGGACAAGAGGATTATAACAGATTAAGACCTTTAAGTTACCGTGGTGCA
GATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAAGTTATGAAAA
TGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCTGGTGTGC
CAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGATAAGCAGTTC
TTCATTGACCATCCAGGTGCCGTGCCCATTAGTACAGCTCACGGGGAGGA
GCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGCAGTTCAAAAA
C
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