CX286794

Overview
NameCX286794
Unique NameCX286794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 3.720e-17
Identity = 53/156 (33.97%), Postives = 85/156 (54.49%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K + +GD  VGK+CLL+ +  +T+   Y+ T+  +F    + ++G T+ L +WDTAGQE +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL   K         V  +TA  +E    +G P ++E S+K
Sbjct:   13 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKK--------VVDYTTA--KEFADSLGIP-FLETSAK 156          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 3.720e-17
Identity = 53/156 (33.97%), Postives = 85/156 (54.49%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K + +GD  VGK+CLL+ +  +T+   Y+ T+  +F    + ++G T+ L +WDTAGQE +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL   K         V  +TA  +E    +G P ++E S+K
Sbjct:   13 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKK--------VVDYTTA--KEFADSLGIP-FLETSAK 156          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB15_BOVIN (Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.720e-17
Identity = 45/122 (36.89%), Postives = 70/122 (57.38%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGTKLDLRDDKQ 447
            + + +GD  VGKTCLL  +T N F + ++ T+  +F    + V+G  V + +WDTAGQE Y  +    YR A    L + + S+ SY+++  KW+ ++  YAP GV  IL+G K D    +Q
Sbjct:   10 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHI-MKWVSDVDEYAPEGVQKILIGNKADEEQKRQ 130          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RACO_DICDI (Rho-related protein racO OS=Dictyostelium discoideum GN=racO PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.858e-17
Identity = 57/165 (34.55%), Postives = 88/165 (53.33%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSAN---VVVNGSTVNLGLWDTAGQED---YNRLRP-LSYRG--ADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDH--PGAVPISTAHGEELRKLIGAPAYIECSS 546
            +K VTVGDG +GKT LL++Y +N F T  V + FD+   N   V++N   + + LW+  G +    Y    P + Y+    +VF+L FS+  + S+ N   KW  E+K   P +P++L G K DLR+++     +    +  IS + G  +   I A  Y ECSS
Sbjct:    5 VKIVTVGDGLIGKTTLLMTYYTNEFNTR-VYSSFDSEYLNPLTVIINDDVIEISLWENDGFDSDGVYKESPPFIKYQPNHINVFLLLFSISDRDSFNNCLTKWNFEIKQNYPSIPVVLCGIKTDLREEENLVYKNSIDNSHFISFSEGVNMANEIDAVGYYECSS 168          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.858e-17
Identity = 53/156 (33.97%), Postives = 85/156 (54.49%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K + +GD  VGK+CLL+ +  +T+   Y+ T+  +F    + ++G T+ L +WDTAGQE +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL   K         V  +TA  +E    +G P ++E S+K
Sbjct:   13 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKSDLTTKK--------VVDFTTA--KEYADQLGIP-FLETSAK 156          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 6.345e-17
Identity = 50/156 (32.05%), Postives = 84/156 (53.85%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K + +GD +VGK+C L+ +  +++   Y+ T+  +F    V V G TV L +WDTAGQE +  +    YRGA   I+ + +    S+ NV K+W+ E+  YA   V  +LVG K DL +++           + T+  +   + +G P ++E S+K
Sbjct:   10 KLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNV-KQWLDEIDRYANDSVRKLLVGNKCDLAENR----------AVDTSVAQAYAQEVGIP-FLETSAK 153          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAS2_RHIRA (Ras-like protein 2 OS=Rhizomucor racemosus GN=RAS2 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 6.345e-17
Identity = 51/159 (32.08%), Postives = 84/159 (52.83%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSK-----KWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K V VGDG VGK+ + I +  +TF  +Y PT+ D++    +++     L + DTAGQE+Y+ +R    R  + F+L +S+ S  ++E V K       + +L+H+    P++LVG K DL  D+Q          + T+ G +L K      + E S+K
Sbjct:   13 KIVMVGDGGVGKSAMTIQFIQSTFVDEYDPTIEDSYRKQCLIDSECAMLDILDTAGQEEYSAMRERFMRNGEGFVLIYSITSYHTFEQVQKLHEQIARVKDLEHF----PMVLVGNKCDLEQDRQ----------VPTSAGRDLAKQYNC-QFFEASAK 156          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 6.345e-17
Identity = 50/156 (32.05%), Postives = 83/156 (53.21%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K + +GD  VGK+CLL+ +  +T+   Y+ T+  +F    + ++G  + L +WDTAGQE +  +    YRGA   I+ + +    S+ NV K+W+ E++ YA   V  +LVG K DL + K           + T+   E    +G P ++E S+K
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNV-KQWMQEIQRYACDSVTRLLVGNKCDLIEKK----------IVDTSTAREYADSVGIP-FLETSAK 153          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 8.287e-17
Identity = 52/156 (33.33%), Postives = 85/156 (54.49%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K + +GD  VGK+CLL+ +  +++   Y+ T+  +F    V  +G T+ L +WDTAGQE +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL +++           +S   G+ L   IG P ++E S+K
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLAENR----------VVSYEAGKALADEIGIP-FLETSAK 153          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.287e-17
Identity = 52/157 (33.12%), Postives = 87/157 (55.41%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            IK + +GD  VGK+CLL+ ++  +F T ++ T+  +F    + ++G  + L +WDTAGQE +  +    YRGA   +L + +  ++S+ N+ + WI  + +H +  V  ILVG K D+ + K+       AVP  TA G+ L    G   + E S+K
Sbjct:   16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDESKR-------AVP--TAKGQALADEYGI-KFFETSAK 161          
The following BLAST results are available for this feature:
BLAST of CX286794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1A_HUMAN3.720e-1733.97Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]
RAB1A_CANFA3.720e-1733.97Ras-related protein Rab-1A OS=Canis familiaris GN=... [more]
RAB15_BOVIN3.720e-1736.89Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 ... [more]
RACO_DICDI4.858e-1734.55Rho-related protein racO OS=Dictyostelium discoide... [more]
RAB1A_LYMST4.858e-1733.97Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
YPTM1_MAIZE6.345e-1732.05GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
RAS2_RHIRA6.345e-1732.08Ras-like protein 2 OS=Rhizomucor racemosus GN=RAS2... [more]
RAB1B_DICDI6.345e-1732.05Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
RIC1_ORYSJ8.287e-1733.33Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
RB1BV_BETVU8.287e-1733.12Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionC01001B03Rv Veg1 Citrus clementina cDNA clone C01001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286794 ID=CX286794; Name=CX286794; organism=Citrus clementina; type=EST; length=551bp
TTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAAAAGCCACTGTC
TTAAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAGTGCGTGACGG
TTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTCTTACACCAGC
AACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATAATTTCAGTGC
AAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTATGGGATACTG
CTGGACAAGAGGATTATAACAGATTAAGACCTTTAAGTTACCGTGGTGCA
GATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAAGTTATGAAAA
TGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCTGGTGTGC
CAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGATAAGCAGTTC
TTCATTGACCATCCAGGTGCCGTGCCCATTAGTACAGCTCACGGGGAGGA
GCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGCAGTTCAAAAA
C
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