CX286794

Overview
NameCX286794
Unique NameCX286794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB1_THEAN (Ras-related protein Rab-1 OS=Theileria annulata GN=rab1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.082e-16
Identity = 40/126 (31.75%), Postives = 72/126 (57.14%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFID 459
            K + +GD   GK+ LL+ +  NT+   Y+ T+  +F    V ++ +T+ L +WDTAGQE +  +    YRGA   I  + + +K S++++++ W+ ++  YA   V  +L+G K+DL D +    D
Sbjct:    9 KIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLVDSRVVLAD 134          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: LET60_CAEEL (Ras protein let-60 OS=Caenorhabditis elegans GN=let-60 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.082e-16
Identity = 48/117 (41.03%), Postives = 71/117 (60.68%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDL 432
            K V VGDG VGK+ L I    N F  +Y PT+ D++   VV++G T  L + DTAGQE+Y+ +R    R  + F+L F++    S+ENV+  ++ I  +K  +  VP++LVG K DL
Sbjct:    5 KLVVVGDGGVGKSALTIQLIQNHFVEEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNEAKSFENVANYREQIRRVKD-SDDVPMVLVGNKCDL 120          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAS1_RHIRA (Ras-like protein 1 OS=Rhizomucor racemosus GN=RAS1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.414e-16
Identity = 56/164 (34.15%), Postives = 88/164 (53.66%), Query Frame = 1
Query:   73 ASRFI---KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSK--KWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            AS F+   K V VG G VGK+ L I +  + F  +Y PT+ D++    V++  T  L + DTAGQE+Y+ +R    R  + F+L +S+ S+ S+E ++   + I  +K      P++LVG K DL  D+Q          +S+  G +L K  G   +IE S+K
Sbjct:    4 ASSFVREYKLVMVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCVIDSETALLDVLDTAGQEEYSAMREQYMRNGEGFLLVYSITSRLSFEEITTFYQQICRVKD-RDYFPMVLVGNKCDLEGDRQ----------VSSQEGRDLAKNFGC-QFIETSAK 155          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.846e-16
Identity = 54/156 (34.62%), Postives = 85/156 (54.49%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K + +GD  VGK+CLL+ +  +T+   Y+ T+  +F    V ++G  + L +WDTAGQE +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL   K   +D+  A     A  +E    IG P ++E S+K
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLAEIDRYASENVNKLLVGNKSDLTGKK--VVDYQAA----KAFADE----IGIP-FLETSAK 153          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAS2_YEAST (Ras-like protein 2 OS=Saccharomyces cerevisiae GN=RAS2 PE=1 SV=4)

HSP 1 Score: 85.5001 bits (210), Expect = 1.846e-16
Identity = 55/164 (33.54%), Postives = 87/164 (53.05%), Query Frame = 1
Query:   61 IKMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            +  S  R  K V VG G VGK+ L I  T + F  +Y PT+ D++   VV++     L + DTAGQE+Y+ +R    R  + F+L +S+ SK+S + +   +   L+      VPI++VG K DL ++KQ          +S   G  + K + AP ++E S+K
Sbjct:    3 LNKSNIREYKLVVVGGGGVGKSALTIQLTQSHFVDEYDPTIEDSYRKQVVIDDEVSILDILDTAGQEEYSAMREQYMRNGEGFLLVYSITSKSSLDELMTYYQQILRVKDTDYVPIVVVGNKSDLENEKQ----------VSYQDGLNMAKQMNAP-FLETSAK 155          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAS1_DROWI (Ras-like protein 1 OS=Drosophila willistoni GN=Ras85D PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.846e-16
Identity = 56/156 (35.90%), Postives = 83/156 (53.21%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K V VG G VGK+ L I    N F  +Y PT+ D++   VV++G T  L + DTAGQE+Y+ +R    R  + F+L F++ S  S+E++   ++ I  +K  A  VP++LVG K DL            +  +      E+ K  G P YIE S+K
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKD-AEEVPMVLVGNKCDL-----------PSWNVQNEQAREVAKQYGIP-YIETSAK 147          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAS1_DROPS (Ras-like protein 1 OS=Drosophila pseudoobscura pseudoobscura GN=Ras85D PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.846e-16
Identity = 56/156 (35.90%), Postives = 82/156 (52.56%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K V VG G VGK+ L I    N F  +Y PT+ D++   VV++G T  L + DTAGQE+Y+ +R    R  + F+L F++ S  S+E++   ++ I  +K  A  VP++LVG K DL               +      E+ K  G P YIE S+K
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKD-AEEVPMVLVGNKCDLT-----------TWNVKNEQAREVAKQYGIP-YIETSAK 147          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAS1_DROPE (Ras-like protein 1 OS=Drosophila persimilis GN=Ras85D PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.846e-16
Identity = 56/156 (35.90%), Postives = 82/156 (52.56%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K V VG G VGK+ L I    N F  +Y PT+ D++   VV++G T  L + DTAGQE+Y+ +R    R  + F+L F++ S  S+E++   ++ I  +K  A  VP++LVG K DL               +      E+ K  G P YIE S+K
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKD-AEEVPMVLVGNKCDLT-----------TWNVKNEQAREVAKQYGIP-YIETSAK 147          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAS1_DROGR (Ras-like protein 1 OS=Drosophila grimshawi GN=Ras85D PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.846e-16
Identity = 56/156 (35.90%), Postives = 83/156 (53.21%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K V VG G VGK+ L I    N F  +Y PT+ D++   VV++G T  L + DTAGQE+Y+ +R    R  + F+L F++ S  S+E++   ++ I  +K  A  VP++LVG K DL            +  +      E+ K  G P YIE S+K
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKD-AEEVPMVLVGNKCDL-----------PSWNVQNEQAREVAKQYGIP-YIETSAK 147          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB1B_PIG (Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.846e-16
Identity = 51/156 (32.69%), Postives = 81/156 (51.92%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K + +GD  VGK+CLL+ +  +T+   Y+ T+  +F    + ++G T+ L +WDTAGQE    +    YRGA   I+ + +  + SY NV K+W+ E+  YA   V  +LVG K DL   K           +     +E    +G P ++E S+K
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERGRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNKSDLTTKK----------VVDNTTAKEFADSLGIP-FLETSAK 153          
The following BLAST results are available for this feature:
BLAST of CX286794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1_THEAN1.082e-1631.75Ras-related protein Rab-1 OS=Theileria annulata GN... [more]
LET60_CAEEL1.082e-1641.03Ras protein let-60 OS=Caenorhabditis elegans GN=le... [more]
RAS1_RHIRA1.414e-1634.15Ras-like protein 1 OS=Rhizomucor racemosus GN=RAS1... [more]
YPTV1_VOLCA1.846e-1634.62GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
RAS2_YEAST1.846e-1633.54Ras-like protein 2 OS=Saccharomyces cerevisiae GN=... [more]
RAS1_DROWI1.846e-1635.90Ras-like protein 1 OS=Drosophila willistoni GN=Ras... [more]
RAS1_DROPS1.846e-1635.90Ras-like protein 1 OS=Drosophila pseudoobscura pse... [more]
RAS1_DROPE1.846e-1635.90Ras-like protein 1 OS=Drosophila persimilis GN=Ras... [more]
RAS1_DROGR1.846e-1635.90Ras-like protein 1 OS=Drosophila grimshawi GN=Ras8... [more]
RAB1B_PIG1.846e-1632.69Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B ... [more]

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Properties
Property NameValue
Genbank descriptionC01001B03Rv Veg1 Citrus clementina cDNA clone C01001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286794 ID=CX286794; Name=CX286794; organism=Citrus clementina; type=EST; length=551bp
TTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAAAAGCCACTGTC
TTAAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAGTGCGTGACGG
TTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTCTTACACCAGC
AACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATAATTTCAGTGC
AAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTATGGGATACTG
CTGGACAAGAGGATTATAACAGATTAAGACCTTTAAGTTACCGTGGTGCA
GATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAAGTTATGAAAA
TGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCTGGTGTGC
CAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGATAAGCAGTTC
TTCATTGACCATCCAGGTGCCGTGCCCATTAGTACAGCTCACGGGGAGGA
GCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGCAGTTCAAAAA
C
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