CX286794

Overview
NameCX286794
Unique NameCX286794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RASM_RAT (Ras-related protein M-Ras OS=Rattus norvegicus GN=Mras PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.947e-14
Identity = 51/156 (32.69%), Postives = 82/156 (52.56%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSK--KWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K V VGDG VGK+ L I +    F  DY PT+ D++  +  ++     L + DTAGQE+++ +R    R  D F++ +S+  KAS+E+V +  + I  +K      P+ILV  K+DL   ++          ++   G+E+      P YIE S+K
Sbjct:   15 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMHLRK----------VTRDQGKEMATKYNIP-YIETSAK 158          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RASM_MOUSE (Ras-related protein M-Ras OS=Mus musculus GN=Mras PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.947e-14
Identity = 51/156 (32.69%), Postives = 82/156 (52.56%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSK--KWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K V VGDG VGK+ L I +    F  DY PT+ D++  +  ++     L + DTAGQE+++ +R    R  D F++ +S+  KAS+E+V +  + I  +K      P+ILV  K+DL   ++          ++   G+E+      P YIE S+K
Sbjct:   15 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMHLRK----------VTRDQGKEMATKYNIP-YIETSAK 158          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RASM_HUMAN (Ras-related protein M-Ras OS=Homo sapiens GN=MRAS PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.947e-14
Identity = 52/156 (33.33%), Postives = 82/156 (52.56%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSK--KWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K V VGDG VGK+ L I +    F  DY PT+ D++  +  ++     L + DTAGQE+++ +R    R  D F++ +S+  KAS+E+V +  + I  +K      P+ILV  K+DL   ++          I+   G+E+      P YIE S+K
Sbjct:   15 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMHLRK----------ITREQGKEMATKHNIP-YIETSAK 158          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.947e-14
Identity = 38/122 (31.15%), Postives = 69/122 (56.56%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIILVGTKLDLRDDK 444
            IK + +GD  VGK+CLL+ ++ ++F   ++ T+  +F    + + G  + L +WDTAGQE +  +    YRGA   +L + +  + S+ N+ + WI  + +H    V  +L+G K D+ + K
Sbjct:   16 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNI-RNWIRNIEQHATDSVNKMLIGNKCDMAEKK 136          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB6_DICDI (Ras-related protein Rab-6 OS=Dictyostelium discoideum GN=rab6 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.947e-14
Identity = 47/126 (37.30%), Postives = 71/126 (56.35%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKH-YAPGVPIILVGTKLDLRDDKQFFID 459
            K V +GD +VGKT ++  +  +TF   Y  T+  D  S  + +   TV L LWDTAGQE +  L P   R + V I+ + + +K S+ N + KWI ++++     V I+LVG K DL D +Q  I+
Sbjct:    8 KLVFLGDQSVGKTSIITRFMYDTFDITYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDITNKVSFTN-TIKWIEDVRNERGNNVVIMLVGNKTDLADKRQVSIE 132          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB5_TOBAC (Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.947e-14
Identity = 47/122 (38.52%), Postives = 66/122 (54.10%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIILVGTKLDLRDDKQ 447
            K V +GD   GK+ L+I +    F      T+   F S+ V VN +TV   +WDTAGQE Y+ L P+ YRGA   I+ + + S  S    +KKW+ EL K   P + + L G K DL D ++
Sbjct:   12 KLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTVSVNNATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSTESLAR-AKKWVQELQKQGNPNMVMALAGNKADLEDKRK 132          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB34_PIG (Ras-related protein Rab-34 OS=Sus scrofa GN=RAB34 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.947e-14
Identity = 50/135 (37.04%), Postives = 75/135 (55.56%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSAN-VVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE-LKHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPIS 483
            K + VGD +VGKTCL+  +  +TF  +Y  T+  +F      V G   +L LWDTAGQE +  +    YRGA   I+ F+L   AS E+ +K+W+ + LK   P  V + LVG+K DL    Q+ +    A+ ++
Sbjct:   54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEH-TKQWLADALKENDPSSVLLFLVGSKKDLSTPAQYVLMEKDALKVA 187          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RB18A_LYMST (Ras-related protein Rab-18A OS=Lymnaea stagnalis GN=RAB18A PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.849e-14
Identity = 54/174 (31.03%), Postives = 83/174 (47.70%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPII--LVGTKLD--------------LRDDKQFFIDHPGAV--PISTAHGEELRKLIGAPAYIECSSK 549
            +K + +G+  VGK+ LL+ +T +TF  +   T+  +F    + V G+   L +WDTAGQE +  L P  YRGA   IL + + SK S+ N    W+ EL+ ++    ++  LVG K+D               R     FI+        +  A  E + K+I  P   E SSK
Sbjct:   10 LKILIIGESGVGKSSLLLRFTEDTFDPEQAATIGVDFKVKTLTVEGNKTKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVSSKQSF-NKLDAWLNELETFSTKHDMVKMLVGNKIDRANHEVTKDEGLKFARKHHMLFIEASAKTNDGVQCAFEELVEKIIQTPGLWETSSK 182          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAS_ARTSA (Ras-like protein (Fragment) OS=Artemia salina PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.849e-14
Identity = 53/149 (35.57%), Postives = 83/149 (55.70%), Query Frame = 1
Query:  109 GAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            G VGK+ L I    N F  +Y PT+ D++   VV++G T  L + DTAGQE+Y+ +R    R  + F+L F++ +  S+E++S  ++ I  +K  A  VP++LVG K DL            AV +S A   E+ +  G P ++E S+K
Sbjct:    1 GGVGKSALTIQLIQNHFVDEYDPTIEDSYRQQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNNAKSFEDISAYREQIKRVKD-AEEVPMVLVGNKCDL---------PTRAVDMSQA--REVARQYGIP-FVETSAK 136          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RASH_MSVHA (Transforming protein p29 OS=Harvey murine sarcoma virus GN=H-RAS PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.849e-14
Identity = 50/156 (32.05%), Postives = 81/156 (51.92%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K V VG   VGK+ L I    N F  +Y PT+ D++   VV++G T  L + DT GQE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL               + +   ++L +  G P YIE S+K
Sbjct:   57 KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AGRTVESRQAQDLARSYGIP-YIETSAK 199          
The following BLAST results are available for this feature:
BLAST of CX286794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASM_RAT2.947e-1432.69Ras-related protein M-Ras OS=Rattus norvegicus GN=... [more]
RASM_MOUSE2.947e-1432.69Ras-related protein M-Ras OS=Mus musculus GN=Mras ... [more]
RASM_HUMAN2.947e-1433.33Ras-related protein M-Ras OS=Homo sapiens GN=MRAS ... [more]
RAB8A_DICDI2.947e-1431.15Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
RAB6_DICDI2.947e-1437.30Ras-related protein Rab-6 OS=Dictyostelium discoid... [more]
RAB5_TOBAC2.947e-1438.52Ras-related protein Rab5 OS=Nicotiana tabacum GN=R... [more]
RAB34_PIG2.947e-1437.04Ras-related protein Rab-34 OS=Sus scrofa GN=RAB34 ... [more]
RB18A_LYMST3.849e-1431.03Ras-related protein Rab-18A OS=Lymnaea stagnalis G... [more]
RAS_ARTSA3.849e-1435.57Ras-like protein (Fragment) OS=Artemia salina PE=3... [more]
RASH_MSVHA3.849e-1432.05Transforming protein p29 OS=Harvey murine sarcoma ... [more]

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Properties
Property NameValue
Genbank descriptionC01001B03Rv Veg1 Citrus clementina cDNA clone C01001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286794 ID=CX286794; Name=CX286794; organism=Citrus clementina; type=EST; length=551bp
TTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAAAAGCCACTGTC
TTAAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAGTGCGTGACGG
TTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTCTTACACCAGC
AACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATAATTTCAGTGC
AAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTATGGGATACTG
CTGGACAAGAGGATTATAACAGATTAAGACCTTTAAGTTACCGTGGTGCA
GATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAAGTTATGAAAA
TGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCTGGTGTGC
CAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGATAAGCAGTTC
TTCATTGACCATCCAGGTGCCGTGCCCATTAGTACAGCTCACGGGGAGGA
GCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGCAGTTCAAAAA
C
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