CX286794

Overview
NameCX286794
Unique NameCX286794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 6.566e-14
Identity = 43/121 (35.54%), Postives = 68/121 (56.20%), Query Frame = 1
Query:   76 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDL 432
            S   K V +GD  VGK+ +L  +T N F  D   T+   F+  ++ + G T+   +WDTAGQE Y  +    YRGA   +L + +  + S++NV  +W+ EL+ +A   + I++VG K DL
Sbjct:   10 SYLFKMVLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNV-HRWLRELRDHADSSIVIMMVGNKSDL 129          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RBH1B_ARATH (Ras-related protein RABH1B OS=Arabidopsis thaliana GN=RABH1B PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.566e-14
Identity = 48/137 (35.04%), Postives = 73/137 (53.28%), Query Frame = 1
Query:   67 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLRDDKQFFIDHPGA 471
            +SA    K V +GD +VGKT ++  +  + F   Y  T+  D  S  + +   TV L LWDTAGQE +  L P   R + V ++ + + S+ S+ N + KWI E++      V ++LVG K DL D +Q  I+   A
Sbjct:    4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWIDEVRTERGSDVIVVLVGNKTDLVDKRQVSIEEAEA 139          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RB27A_RAT (Ras-related protein Rab-27A OS=Rattus norvegicus GN=Rab27a PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.566e-14
Identity = 55/167 (32.93%), Postives = 78/167 (46.71%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-----------NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK--HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSS 546
            IK + +GD  VGKT +L  YT   F + ++ TV  +F    VV            G  ++L LWDTAGQE +  L    +R A  F+L F L ++ S+ NV + WI +L+   Y     I+L G K DL D +           +      EL +  G P Y E S+
Sbjct:   10 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGTVGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYCENPDIVLCGNKSDLEDQR----------AVKEEEARELAEKYGIP-YFETSA 164          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RB27A_MOUSE (Ras-related protein Rab-27A OS=Mus musculus GN=Rab27a PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.566e-14
Identity = 55/167 (32.93%), Postives = 78/167 (46.71%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-----------NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK--HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSS 546
            IK + +GD  VGKT +L  YT   F + ++ TV  +F    VV            G  ++L LWDTAGQE +  L    +R A  F+L F L ++ S+ NV + WI +L+   Y     I+L G K DL D +           +      EL +  G P Y E S+
Sbjct:   10 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYCENPDIVLCGNKSDLEDQR----------AVKEEEARELAEKYGIP-YFETSA 164          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAS_LACBI (Ras-like protein OS=Laccaria bicolor PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.566e-14
Identity = 53/164 (32.32%), Postives = 85/164 (51.83%), Query Frame = 1
Query:   73 ASRFI---KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            AS+F+   K V VG G  GK+CL I    + F  +Y PT+ +++    V++     L + DTAGQE+Y+ +R    R  + F+L +S+ S+ S+E +   ++ I  +K      PII+VG K DL  ++           +S   GE L +  G   +IE S+K
Sbjct:    2 ASKFLREYKLVVVGGGGEGKSCLTIQLIQSHFVDEYDPTIEESYRKQCVIDDEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEIMTFQQQILRVKD-KDYFPIIVVGNKCDLDKER----------VVSKQEGESLARQFGC-KFIETSAK 153          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB10_RAT (Ras-related protein Rab-10 OS=Rattus norvegicus GN=Rab10 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.566e-14
Identity = 46/151 (30.46%), Postives = 78/151 (51.66%), Query Frame = 1
Query:   64 KMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRK 510
            K +     K + +GD  VGKTC+L  ++ + F T ++ T+  +F    V + G  + L +WDTAGQE ++ +    YRGA   +L + + +  S+EN+S KW+  + +H    V  +L+  K D+        DH   VP     GE++ +
Sbjct:    3 KKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIEIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENIS-KWLRNIDQHANEDVERMLLRNKCDM--------DHKRVVP--KGKGEQIAR 142          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RB27A_PIG (Ras-related protein Rab-27A OS=Sus scrofa GN=RAB27A PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.576e-14
Identity = 48/133 (36.09%), Postives = 68/133 (51.13%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-----------NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK--HYAPGVPIILVGTKLDLRDDK 444
            IK + +GD  VGKT +L  YT   F + ++ TV  +F    VV            G  ++L LWDTAGQE +  L    +R A  F+L F L ++ S+ NV + WI +L+   Y     I+L G K DL D +
Sbjct:   10 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAIGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYCENPDIVLCGNKSDLEDQR 141          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RB27A_HUMAN (Ras-related protein Rab-27A OS=Homo sapiens GN=RAB27A PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 8.576e-14
Identity = 48/133 (36.09%), Postives = 68/133 (51.13%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-----------NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK--HYAPGVPIILVGTKLDLRDDK 444
            IK + +GD  VGKT +L  YT   F + ++ TV  +F    VV            G  ++L LWDTAGQE +  L    +R A  F+L F L ++ S+ NV + WI +L+   Y     I+L G K DL D +
Sbjct:   10 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYCENPDIVLCGNKSDLEDQR 141          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RB27A_CANFA (Ras-related protein Rab-27A OS=Canis familiaris GN=RAB27A PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.576e-14
Identity = 48/133 (36.09%), Postives = 68/133 (51.13%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-----------NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK--HYAPGVPIILVGTKLDLRDDK 444
            IK + +GD  VGKT +L  YT   F + ++ TV  +F    VV            G  ++L LWDTAGQE +  L    +R A  F+L F L ++ S+ NV + WI +L+   Y     I+L G K DL D +
Sbjct:   10 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAIGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYCENPDIVLCGNKSDLEDQR 141          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RASN_DANRE (GTPase NRas OS=Danio rerio GN=nras PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.576e-14
Identity = 51/156 (32.69%), Postives = 81/156 (51.92%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K V VG G VGK+ L I    N F  +Y PT+ D++   VV++G T  L + DTAGQE+Y+ +R    R  + F+  F++ +  S+ +V   ++ I  +K  +  VP++LVG   DL            A  + T   +EL +  G   ++E S+K
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADVHLYREQIKRVKD-SDDVPMVLVGNICDL------------ARTVDTKQAQELARSYGI-EFVETSAK 146          
The following BLAST results are available for this feature:
BLAST of CX286794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RGP2_ORYSJ6.566e-1435.54Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
RBH1B_ARATH6.566e-1435.04Ras-related protein RABH1B OS=Arabidopsis thaliana... [more]
RB27A_RAT6.566e-1432.93Ras-related protein Rab-27A OS=Rattus norvegicus G... [more]
RB27A_MOUSE6.566e-1432.93Ras-related protein Rab-27A OS=Mus musculus GN=Rab... [more]
RAS_LACBI6.566e-1432.32Ras-like protein OS=Laccaria bicolor PE=2 SV=1[more]
RAB10_RAT6.566e-1430.46Ras-related protein Rab-10 OS=Rattus norvegicus GN... [more]
RB27A_PIG8.576e-1436.09Ras-related protein Rab-27A OS=Sus scrofa GN=RAB27... [more]
RB27A_HUMAN8.576e-1436.09Ras-related protein Rab-27A OS=Homo sapiens GN=RAB... [more]
RB27A_CANFA8.576e-1436.09Ras-related protein Rab-27A OS=Canis familiaris GN... [more]
RASN_DANRE8.576e-1432.69GTPase NRas OS=Danio rerio GN=nras PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC01001B03Rv Veg1 Citrus clementina cDNA clone C01001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286794 ID=CX286794; Name=CX286794; organism=Citrus clementina; type=EST; length=551bp
TTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAAAAGCCACTGTC
TTAAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAGTGCGTGACGG
TTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTCTTACACCAGC
AACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATAATTTCAGTGC
AAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTATGGGATACTG
CTGGACAAGAGGATTATAACAGATTAAGACCTTTAAGTTACCGTGGTGCA
GATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAAGTTATGAAAA
TGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCTGGTGTGC
CAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGATAAGCAGTTC
TTCATTGACCATCCAGGTGCCGTGCCCATTAGTACAGCTCACGGGGAGGA
GCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGCAGTTCAAAAA
C
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