CX286794

Overview
NameCX286794
Unique NameCX286794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10434 contig Ccv1_Contig10434:112..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RASL_COPCI (24 kDa Ras-like protein OS=Coprinopsis cinerea GN=CC-RAS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.576e-14
Identity = 50/159 (31.45%), Postives = 80/159 (50.31%), Query Frame = 1
Query:   79 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            R  K V VG G VGK+ L I +  + F  +Y PT+ D++    +++     L + DTAGQE+Y  +R    R  + F+L +S+ S+ S+E +S   + I  +K      P+I+V  K DL  ++Q          +    G +L K  G   +IE S+K
Sbjct:    9 REYKLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCIIDDEVALLDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRNSFEEISIFHQQILRVKD-QDSFPVIVVANKCDLEYERQ----------VGMNEGRDLAKHFGC-KFIETSAK 155          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RASL_COPC7 (24 kDa Ras-like protein (Fragments) OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=CC-RAS PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 8.576e-14
Identity = 50/159 (31.45%), Postives = 80/159 (50.31%), Query Frame = 1
Query:   79 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            R  K V VG G VGK+ L I +  + F  +Y PT+ D++    +++     L + DTAGQE+Y  +R    R  + F+L +S+ S+ S+E +S   + I  +K      P+I+V  K DL  ++Q          +    G +L K  G   +IE S+K
Sbjct:    9 REYKLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCIIDDEVALLDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRNSFEEISIFHQQILRVKD-QDSFPVIVVANKCDLEYERQ----------VGMNEGRDLAKHFGC-KFIETSAK 155          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAS2_NEUCR (Protein ras-2 OS=Neurospora crassa GN=ras-2 PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 8.576e-14
Identity = 56/174 (32.18%), Postives = 82/174 (47.13%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSK--KWIPELKHYA------PG------------VPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K V +GDG VGKT L I      F   Y PT+ D++   VV++G    L + DTAGQE+Y  LR    R  + F+L +S+ S++S+  + K    I  +K         PG            VPI+LVG K D   +++          +ST  G  L + +G   + E S+K
Sbjct:   10 KLVVLGDGGVGKTALTIQLCLEHFVETYDPTIEDSYRKQVVIDGQACMLEVLDTAGQEEYTALRDQWIRDGEGFVLVYSISSRSSFARIKKFHHQIQRVKESTSSPSAYPGSSPLAATNPSAPVPIMLVGNKSDRVTERE----------VSTQEGHALARELGC-EFTEASAK 172          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RABL_DICDI (Ras-related protein RabL OS=Dictyostelium discoideum GN=rabL PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.576e-14
Identity = 45/123 (36.59%), Postives = 69/123 (56.10%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIILVGTKLDL-RDDK 444
            +K +T+GD  VGKT L   Y +  +  +  P++  D F   + V    V L +WDT GQE +    P  +RGA+ + L F + ++ S+ N+ K W+ E+  Y  G +P +LVGTK D+ R DK
Sbjct:    8 LKIITLGDSNVGKTSLFYHYVNGEYRYNRPPSIGPDYFIKELKVENKHVFLMVWDTCGQERFQAFSPPYFRGANCYTLCFDIHNEESFINLGK-WMDEIIKYCYGNIPFVLVGTKSDIPRTDK 129          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB5B_DICDI (Putative ras-related protein Rab-5B OS=Dictyostelium discoideum GN=rab5B PE=5 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.576e-14
Identity = 45/118 (38.14%), Postives = 68/118 (57.63%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIILVGTKLDL 432
            K V +G+   GKTC+      N F PTD   T+   F   ++VV+   + L +WDTAGQE Y  L P+ YRGA   ++ + +  K ++E + K+W+ EL KH +P + + L G K+DL
Sbjct:   51 KLVLLGEMNTGKTCISSRLVRNEFGPTD--STIGAAFLVKSMVVDNINIKLEIWDTAGQERYRSLTPMYYRGAAAAVVVYDITKKNTFETL-KRWVSELQKHASPNLILALAGNKVDL 165          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB3D_RAT (GTP-binding protein Rab-3D OS=Rattus norvegicus GN=Rab3d PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 8.576e-14
Identity = 42/121 (34.71%), Postives = 67/121 (55.37%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDK 444
            K + +G+ +VGKT  L  Y  ++F   +V TV  +F    V  +   + L +WDTAGQE Y  +    YRGA  F+L + + ++ S+  V + W  ++K Y+     +ILVG K DL D++
Sbjct:   24 KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAV-QDWATQIKTYSWDNAQVILVGNKCDLEDER 143          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB3D_MOUSE (Ras-related protein Rab-3D OS=Mus musculus GN=Rab3d PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.576e-14
Identity = 42/121 (34.71%), Postives = 67/121 (55.37%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDK 444
            K + +G+ +VGKT  L  Y  ++F   +V TV  +F    V  +   + L +WDTAGQE Y  +    YRGA  F+L + + ++ S+  V + W  ++K Y+     +ILVG K DL D++
Sbjct:   24 KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAV-QDWATQIKTYSWDNAQVILVGNKCDLEDER 143          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB3D_HUMAN (Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3D PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.576e-14
Identity = 42/121 (34.71%), Postives = 67/121 (55.37%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDK 444
            K + +G+ +VGKT  L  Y  ++F   +V TV  +F    V  +   + L +WDTAGQE Y  +    YRGA  F+L + + ++ S+  V + W  ++K Y+     +ILVG K DL D++
Sbjct:   24 KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLEDER 143          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB31_RAT (Ras-related protein Rab-31 OS=Rattus norvegicus GN=Rab31 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 8.576e-14
Identity = 50/161 (31.06%), Postives = 86/161 (53.42%), Query Frame = 1
Query:   73 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGL-WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            A R +K   +GD  VGK+ ++  +  + F  +  PT+  +F    V  G+ ++  L WDTAGQE ++ L P+ YRG+   ++ + +  + S+  + KKW+ ELK + P  + + + G K DL D ++        VP+  A  +E  + IGA   +E S+K
Sbjct:    2 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIRE--------VPLKDA--KEYAESIGA-LVVETSAK 150          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB31_MOUSE (Ras-related protein Rab-31 OS=Mus musculus GN=Rab31 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.576e-14
Identity = 44/148 (29.73%), Postives = 79/148 (53.38%), Query Frame = 1
Query:   73 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGL-WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGTKLDLRD-------DKQFFIDHPGAVPISTA 489
            A R +K   +GD  VGK+ ++  +  + F  +  PT+  +F    V  G+ ++  L WDTAGQE ++ L P+ YRG+   ++ + +  + S+  + KKW+ ELK + P  + + + G K DL D       D + + +  GA+ + T+
Sbjct:    2 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETS 148          
The following BLAST results are available for this feature:
BLAST of CX286794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASL_COPCI8.576e-1431.4524 kDa Ras-like protein OS=Coprinopsis cinerea GN=... [more]
RASL_COPC78.576e-1431.4524 kDa Ras-like protein (Fragments) OS=Coprinopsis... [more]
RAS2_NEUCR8.576e-1432.18Protein ras-2 OS=Neurospora crassa GN=ras-2 PE=3 S... [more]
RABL_DICDI8.576e-1436.59Ras-related protein RabL OS=Dictyostelium discoide... [more]
RAB5B_DICDI8.576e-1438.14Putative ras-related protein Rab-5B OS=Dictyosteli... [more]
RAB3D_RAT8.576e-1434.71GTP-binding protein Rab-3D OS=Rattus norvegicus GN... [more]
RAB3D_MOUSE8.576e-1434.71Ras-related protein Rab-3D OS=Mus musculus GN=Rab3... [more]
RAB3D_HUMAN8.576e-1434.71Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3... [more]
RAB31_RAT8.576e-1431.06Ras-related protein Rab-31 OS=Rattus norvegicus GN... [more]
RAB31_MOUSE8.576e-1429.73Ras-related protein Rab-31 OS=Mus musculus GN=Rab3... [more]

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Properties
Property NameValue
Genbank descriptionC01001B03Rv Veg1 Citrus clementina cDNA clone C01001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286794 ID=CX286794; Name=CX286794; organism=Citrus clementina; type=EST; length=551bp
TTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAAAAGCCACTGTC
TTAAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAGTGCGTGACGG
TTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTCTTACACCAGC
AACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATAATTTCAGTGC
AAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTATGGGATACTG
CTGGACAAGAGGATTATAACAGATTAAGACCTTTAAGTTACCGTGGTGCA
GATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAAGTTATGAAAA
TGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCTGGTGTGC
CAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGATAAGCAGTTC
TTCATTGACCATCCAGGTGCCGTGCCCATTAGTACAGCTCACGGGGAGGA
GCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGCAGTTCAAAAA
C
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