CX286794

Overview
NameCX286794
Unique NameCX286794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB24_MOUSE (Ras-related protein Rab-24 OS=Mus musculus GN=Rab24 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 8.576e-14
Identity = 50/128 (39.06%), Postives = 68/128 (53.12%), Query Frame = 1
Query:   67 MSASRF-IKCVTVGDGAVGKTCLLISYTSNTFPTD-YVPTVFDNFSANVVVNGS-TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 441
            MS  R  +K V +G   VGKT L+  Y  + F    Y  T+   F A V+  G  TV LG+WDTAG E Y  +  + YRGA   I+ + L   +S+E  +K W+ EL+    G  I L GTK DL ++
Sbjct:    1 MSGQRVDVKVVMLGKEYVGKTSLVERYVHDRFLVGPYQNTIGAAFVAKVMCVGDRTVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFER-AKFWVKELRSLEEGCQIYLCGTKSDLLEE 127          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB24_HUMAN (Ras-related protein Rab-24 OS=Homo sapiens GN=RAB24 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.576e-14
Identity = 50/128 (39.06%), Postives = 68/128 (53.12%), Query Frame = 1
Query:   67 MSASRF-IKCVTVGDGAVGKTCLLISYTSNTFPTD-YVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 441
            MS  R  +K V +G   VGKT L+  Y  + F    Y  T+   F A V+ V   TV LG+WDTAG E Y  +  + YRGA   I+ + L   +S+E  +K W+ EL+    G  I L GTK DL ++
Sbjct:    1 MSGQRVDVKVVMLGKEYVGKTSLVERYVHDRFLVGPYQNTIGAAFVAKVMSVGDRTVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFER-AKFWVKELRSLEEGCQIYLCGTKSDLLEE 127          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.576e-14
Identity = 43/118 (36.44%), Postives = 66/118 (55.93%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLR 435
            K V +GD  VGK+ LL  +T N F  +   T+   F+   + V+   +   +WDTAGQE Y  +    YRGA   +L + +   +++ENV + W+ EL+ H  P + ++LVG K DLR
Sbjct:   15 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENV-ETWLKELRNHTDPNIVVMLVGNKSDLR 131          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: YPT7_YEAST (GTP-binding protein YPT7 OS=Saccharomyces cerevisiae GN=YPT7 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.120e-13
Identity = 47/152 (30.92%), Postives = 78/152 (51.32%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTV-NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIG 519
            +K + +GD  VGKT L+  Y ++ +   Y  T+  +F +  V V+G  V  + +WDTAGQE +  L    YRGAD  +L + + + +S+EN+ K W  E   +A        P +++G K+D  + K+          +S    +EL K +G
Sbjct:    9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKI---------VSEKSAQELAKSLG 150          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: YPT7_SCHPO (GTP-binding protein ypt7 OS=Schizosaccharomyces pombe GN=ypt7 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.120e-13
Identity = 48/144 (33.33%), Postives = 75/144 (52.08%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE-LKHYAPG----VPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGE 498
            +K + +G+  VGKT ++  Y +  F  DY  T+  +F +  V+V+   V L LWDTAGQE +  L    YRGAD  +L + + +  S+E +   W  E L   +P      P IL+G K+D+ + K+  +    A+    A GE
Sbjct:    9 LKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLD-SWRDEFLIQASPSNPETFPFILLGNKVDVEEQKR-MVSKSKALAFCQARGE 150          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RIT2_HUMAN (GTP-binding protein Rit2 OS=Homo sapiens GN=RIT2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.120e-13
Identity = 40/126 (31.75%), Postives = 72/126 (57.14%), Query Frame = 1
Query:   76 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQ 447
            SR  K V +G G VGK+ + + + S+ FP  + PT+ D +   V ++     L + DTAGQ ++  +R    RG + FI+ +S+  + S++  +  K+ I +++H    +P++LVG K+DL   +Q
Sbjct:   18 SREYKVVMLGAGGVGKSAMTMQFISHQFPDYHDPTIEDAYKTQVRIDNEPAYLDILDTAGQAEFTAMREQYMRGGEGFIICYSVTDRQSFQEAAKFKELIFQVRH-TYEIPLVLVGNKIDLEQFRQ 142          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAP2B_RAT (Ras-related protein Rap-2b OS=Rattus norvegicus GN=Rap2b PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.120e-13
Identity = 49/159 (30.82%), Postives = 84/159 (52.83%), Query Frame = 1
Query:   79 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            R  K V +G G VGK+ L + + + +F   Y PT+ D +   + V+ S   L + DTAG E +  +R L  +    FIL +SL+++ S++++   +  I  +K Y   VP+ILVG K+DL  +++          +S   G+ L +    P ++E S+K
Sbjct:    2 REYKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-ERVPMILVGNKVDLEGERE----------VSYGEGKALAEEWSCP-FMETSAK 148          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAP2B_MOUSE (Ras-related protein Rap-2b OS=Mus musculus GN=Rap2b PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.120e-13
Identity = 49/159 (30.82%), Postives = 84/159 (52.83%), Query Frame = 1
Query:   79 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            R  K V +G G VGK+ L + + + +F   Y PT+ D +   + V+ S   L + DTAG E +  +R L  +    FIL +SL+++ S++++   +  I  +K Y   VP+ILVG K+DL  +++          +S   G+ L +    P ++E S+K
Sbjct:    2 REYKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-ERVPMILVGNKVDLEGERE----------VSYGEGKALAEEWSCP-FMETSAK 148          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAP2B_HUMAN (Ras-related protein Rap-2b OS=Homo sapiens GN=RAP2B PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.120e-13
Identity = 49/159 (30.82%), Postives = 84/159 (52.83%), Query Frame = 1
Query:   79 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            R  K V +G G VGK+ L + + + +F   Y PT+ D +   + V+ S   L + DTAG E +  +R L  +    FIL +SL+++ S++++   +  I  +K Y   VP+ILVG K+DL  +++          +S   G+ L +    P ++E S+K
Sbjct:    2 REYKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-ERVPMILVGNKVDLEGERE----------VSYGEGKALAEEWSCP-FMETSAK 148          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAP2A_PIG (Ras-related protein Rap-2a OS=Sus scrofa GN=RAP2A PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.120e-13
Identity = 49/159 (30.82%), Postives = 84/159 (52.83%), Query Frame = 1
Query:   79 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            R  K V +G G VGK+ L + + + +F   Y PT+ D +   + V+ S   L + DTAG E +  +R L  +    FIL +SL+++ S++++   +  I  +K Y   VP+ILVG K+DL  +++          +S   G+ L +    P ++E S+K
Sbjct:    2 REYKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-ERVPMILVGNKVDLEGERE----------VSYGEGKALAEEWSCP-FMETSAK 148          
The following BLAST results are available for this feature:
BLAST of CX286794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB24_MOUSE8.576e-1439.06Ras-related protein Rab-24 OS=Mus musculus GN=Rab2... [more]
RAB24_HUMAN8.576e-1439.06Ras-related protein Rab-24 OS=Homo sapiens GN=RAB2... [more]
RAA1C_ARATH8.576e-1436.44Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
YPT7_YEAST1.120e-1330.92GTP-binding protein YPT7 OS=Saccharomyces cerevisi... [more]
YPT7_SCHPO1.120e-1333.33GTP-binding protein ypt7 OS=Schizosaccharomyces po... [more]
RIT2_HUMAN1.120e-1331.75GTP-binding protein Rit2 OS=Homo sapiens GN=RIT2 P... [more]
RAP2B_RAT1.120e-1330.82Ras-related protein Rap-2b OS=Rattus norvegicus GN... [more]
RAP2B_MOUSE1.120e-1330.82Ras-related protein Rap-2b OS=Mus musculus GN=Rap2... [more]
RAP2B_HUMAN1.120e-1330.82Ras-related protein Rap-2b OS=Homo sapiens GN=RAP2... [more]
RAP2A_PIG1.120e-1330.82Ras-related protein Rap-2a OS=Sus scrofa GN=RAP2A ... [more]

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Properties
Property NameValue
Genbank descriptionC01001B03Rv Veg1 Citrus clementina cDNA clone C01001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286794 ID=CX286794; Name=CX286794; organism=Citrus clementina; type=EST; length=551bp
TTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAAAAGCCACTGTC
TTAAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAGTGCGTGACGG
TTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTCTTACACCAGC
AACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATAATTTCAGTGC
AAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTATGGGATACTG
CTGGACAAGAGGATTATAACAGATTAAGACCTTTAAGTTACCGTGGTGCA
GATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAAGTTATGAAAA
TGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCTGGTGTGC
CAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGATAAGCAGTTC
TTCATTGACCATCCAGGTGCCGTGCCCATTAGTACAGCTCACGGGGAGGA
GCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGCAGTTCAAAAA
C
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