CX286794

Overview
NameCX286794
Unique NameCX286794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAP1B_CYPCA (Ras-related protein Rap-1b OS=Cyprinus carpio GN=rap1b PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.120e-13
Identity = 47/159 (29.56%), Postives = 80/159 (50.31%), Query Frame = 1
Query:   79 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            R  K V +G G VGK+ L + +    F   Y PT+ D++   V V+G    L + DTAG E +  +R L  +    F L +S+ +++++ ++   ++ I  +K     VPIILVG K DL D++           +    G+ L +   + A++E S+K
Sbjct:    2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TDDVPIILVGNKCDLEDER----------VVGKEQGQNLARQWNSCAFLESSAK 149          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB18_DICDI (Ras-related protein Rab-18 OS=Dictyostelium discoideum GN=rab18 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.120e-13
Identity = 51/164 (31.10%), Postives = 86/164 (52.44%), Query Frame = 1
Query:   67 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            M   +  K + +GD  VGKT ++  ++ +TF  D + T+   F    V V+G  V+L +WDTAGQE +  L    YRGA   IL + +  + S++N++  W+ E++++A    +  +LVG K+D  + +           ++   G E  K   A  +IECS+K
Sbjct:    1 MEEDKQYKVLLIGDSDVGKTSIVKRFSDDTFDEDLLCTIGVEFKMKEVKVDGKKVDLCIWDTAGQEKFRALISSYYRGAHGIILTYDVTKRESFDNLN-YWLNEVENFANRSNLVKLLVGNKIDKENRE-----------VTREEGAEFAKK-KAMLFIECSAK 151          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: VPS21_YEAST (Vacuolar protein sorting-associated protein 21 OS=Saccharomyces cerevisiae GN=VPS21 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 49/157 (31.21%), Postives = 81/157 (51.59%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            IK V +G+ AVGK+ +++ + SN F  +  PT+   F +  V +N  TV   +WDTAGQE +  L P+ YR A   ++ + +    S+   ++ W+ EL   A   + I LVG K+D+       +   G   ++   GE+L +  G   + E S+K
Sbjct:    8 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIK-ARHWVKELHEQASKDIIIALVGNKIDM-------LQEGGERKVAREEGEKLAEEKGL-LFFETSAK 155          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RIT2_RAT (GTP-binding protein Rit2 OS=Rattus norvegicus GN=Rit2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 40/126 (31.75%), Postives = 72/126 (57.14%), Query Frame = 1
Query:   76 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQ 447
            SR  K V +G G VGK+ + + + S+ FP  + PT+ D +   V ++     L + DTAGQ ++  +R    RG + FI+ +S+  + S++  +  K+ I +++H    +P++LVG K+DL   +Q
Sbjct:   18 SREYKVVMLGAGGVGKSAVTMQFISHQFPDYHDPTIEDAYKTQVRIDNEPAYLDILDTAGQAEFTAMREQYMRGGEGFIICYSVTDRQSFQEAAKFKELIFQVRH-TYEIPLVLVGNKIDLEQFRQ 142          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RIT2_MOUSE (GTP-binding protein Rit2 OS=Mus musculus GN=Rit2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 40/126 (31.75%), Postives = 72/126 (57.14%), Query Frame = 1
Query:   76 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQ 447
            SR  K V +G G VGK+ + + + S+ FP  + PT+ D +   V ++     L + DTAGQ ++  +R    RG + FI+ +S+  + S++  +  K+ I +++H    +P++LVG K+DL   +Q
Sbjct:   18 SREYKVVMLGAGGVGKSAVTMQFISHQFPDYHDPTIEDAYKTQVRIDNEPAYLDILDTAGQAEFTAMREQYMRGGEGFIICYSVTDRQSFQEAAKFKELIFQVRH-TYEIPLVLVGNKIDLEQFRQ 142          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RB33A_MOUSE (Ras-related protein Rab-33A OS=Mus musculus GN=Rab33a PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 44/127 (34.65%), Postives = 64/127 (50.39%), Query Frame = 1
Query:   79 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQ 447
            R  K + +GD  VGKTCL   +   TFP     T+  +F    V + G  + + +WDTAGQE + + +    YR     +  + +    S+ N+ K WI E   +A  P VP +LVG K DLR+  Q
Sbjct:   35 RIFKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNL-KMWIQECNGHAVPPLVPKVLVGNKCDLREQIQ 160          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RB33A_HUMAN (Ras-related protein Rab-33A OS=Homo sapiens GN=RAB33A PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 44/127 (34.65%), Postives = 64/127 (50.39%), Query Frame = 1
Query:   79 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQ 447
            R  K + +GD  VGKTCL   +   TFP     T+  +F    V + G  + + +WDTAGQE + + +    YR     +  + +    S+ N+ K WI E   +A  P VP +LVG K DLR+  Q
Sbjct:   35 RIFKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNL-KMWIQECNGHAVPPLVPKVLVGNKCDLREQIQ 160          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 44/131 (33.59%), Postives = 71/131 (54.20%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAV 474
            K V +GD  VGK+ +L  +T N F  +   T+   F+   + V G TV   +WDTAGQE Y  +    YRGA   +L + +  + +++NV ++W+ EL+ +A   + I++ G K DL   +    D  GA+
Sbjct:   14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-QRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGAL 143          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 43/118 (36.44%), Postives = 66/118 (55.93%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLR 435
            K V +GD  VGK+ +L  +T N F  +   T+   F+   + V G TV   +WDTAGQE Y  +    YRGA   +L + +  + +++NV ++W+ EL+ H    + IIL G K DL+
Sbjct:   14 KMVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNV-QRWLRELRDHRDSNIVIILAGNKSDLK 130          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAS_CRYNE (Ras-like protein OS=Cryptococcus neoformans GN=RAS1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 52/166 (31.33%), Postives = 85/166 (51.20%), Query Frame = 1
Query:   67 MSASRFI---KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            MS ++F+   K V VG G VGK+ L I +  + F  +Y PT+ D++    +++     L + DTAGQE+Y  +R    R  + F+L +S+ S++S+E VS   + I  +K      P+++V  K DL  ++Q          +    G +L K   A   IE S+K
Sbjct:    1 MSKAQFLREYKLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCIIDEEVALLDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRSSFEEVSTFHQQILRVKD-KDYFPVVVVANKCDLEYERQ----------VQPHEGRDLAKRFNAQC-IETSAK 154          
The following BLAST results are available for this feature:
BLAST of CX286794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAP1B_CYPCA1.120e-1329.56Ras-related protein Rap-1b OS=Cyprinus carpio GN=r... [more]
RAB18_DICDI1.120e-1331.10Ras-related protein Rab-18 OS=Dictyostelium discoi... [more]
VPS21_YEAST1.463e-1331.21Vacuolar protein sorting-associated protein 21 OS=... [more]
RIT2_RAT1.463e-1331.75GTP-binding protein Rit2 OS=Rattus norvegicus GN=R... [more]
RIT2_MOUSE1.463e-1331.75GTP-binding protein Rit2 OS=Mus musculus GN=Rit2 P... [more]
RB33A_MOUSE1.463e-1334.65Ras-related protein Rab-33A OS=Mus musculus GN=Rab... [more]
RB33A_HUMAN1.463e-1334.65Ras-related protein Rab-33A OS=Homo sapiens GN=RAB... [more]
RB11C_LOTJA1.463e-1333.59Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RB11A_TOBAC1.463e-1336.44Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
RAS_CRYNE1.463e-1331.33Ras-like protein OS=Cryptococcus neoformans GN=RAS... [more]

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Properties
Property NameValue
Genbank descriptionC01001B03Rv Veg1 Citrus clementina cDNA clone C01001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286794 ID=CX286794; Name=CX286794; organism=Citrus clementina; type=EST; length=551bp
TTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAAAAGCCACTGTC
TTAAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAGTGCGTGACGG
TTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTCTTACACCAGC
AACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATAATTTCAGTGC
AAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTATGGGATACTG
CTGGACAAGAGGATTATAACAGATTAAGACCTTTAAGTTACCGTGGTGCA
GATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAAGTTATGAAAA
TGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCTGGTGTGC
CAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGATAAGCAGTTC
TTCATTGACCATCCAGGTGCCGTGCCCATTAGTACAGCTCACGGGGAGGA
GCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGCAGTTCAAAAA
C
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