CX286794

Overview
NameCX286794
Unique NameCX286794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RASU_DICDI (Ras-like protein rasU OS=Dictyostelium discoideum GN=rasU PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 41/120 (34.17%), Postives = 72/120 (60.00%), Query Frame = 1
Query:   91 CVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY-APGVPIILVGTKLDLRDDKQ 447
            CV +GDG VGKT + I + SN F   Y PT+ D +    +++     L + DTAGQ++ N +R    +  + FIL +S+ S++S++ + + ++ ++K   +  VPII++  K DL D++Q
Sbjct:   18 CV-MGDGGVGKTSITIQFISNHFVNCYDPTIEDLYRKQCLIDDQVYMLDILDTAGQDELNAIRNHWIKSCEGFILVYSVTSRSSFDQI-QSFLDQIKFLKSEKVPIIMIANKSDLDDERQ 135          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RABM_DICDI (Ras-related protein RabM OS=Dictyostelium discoideum GN=rabM PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 39/126 (30.95%), Postives = 71/126 (56.35%), Query Frame = 1
Query:   73 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIILVGTKLDL-RDDK 444
            + + +K +T+GD  VGKT +  ++ +  +  +        +S  + +    V L +WDT  QE +N L P+ YR ++ + L F + ++ S++N+ K W+ E + +  G VP +L+GTK D+ R DK
Sbjct:    2 SKKSLKIITLGDSYVGKTSVFNNFVTGKYEINECTVSPSFYSKTLTIENEPVILNVWDTCSQERFNGLSPIYYRWSNCYTLCFDIHNEKSFKNLDK-WMDEARKFCIGKVPFVLIGTKKDIPRTDK 126          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 36/122 (29.51%), Postives = 69/122 (56.56%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIILVGTKLDLRDDK 444
            +K + +GD  VGK+CLL+ ++  +F   ++ T+  +F    + + G  + L +WDTAGQE +  +    YRGA   +L + +  + S+ ++ + WI  + +H +  V  +L+G K D+ + K
Sbjct:   16 VKLLLIGDSGVGKSCLLLRFSDGSFTPSFIATIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSI-RNWIRNIEQHASDSVNKMLIGNKCDMTEKK 136          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB4B_RAT (Ras-related protein Rab-4B OS=Rattus norvegicus GN=Rab4b PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 42/122 (34.43%), Postives = 67/122 (54.92%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQ 447
            K + +G    GK+CLL  +  N F  D   T+   F + VV V G TV L +WDTAGQE +  +    YRGA   +L + + S+ +Y +++  W+ + +  A P + +IL G K DL  +++
Sbjct:   10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLDPERE 130          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB4B_MOUSE (Ras-related protein Rab-4B OS=Mus musculus GN=Rab4b PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 42/122 (34.43%), Postives = 67/122 (54.92%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQ 447
            K + +G    GK+CLL  +  N F  D   T+   F + VV V G TV L +WDTAGQE +  +    YRGA   +L + + S+ +Y +++  W+ + +  A P + +IL G K DL  +++
Sbjct:   10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLDPERE 130          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB4B_HUMAN (Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4B PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 42/122 (34.43%), Postives = 67/122 (54.92%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQ 447
            K + +G    GK+CLL  +  N F  D   T+   F + VV V G TV L +WDTAGQE +  +    YRGA   +L + + S+ +Y +++  W+ + +  A P + +IL G K DL  +++
Sbjct:   10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLDPERE 130          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB4B_CANFA (Ras-related protein Rab-4B OS=Canis familiaris GN=RAB4B PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 42/122 (34.43%), Postives = 67/122 (54.92%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQ 447
            K + +G    GK+CLL  +  N F  D   T+   F + VV V G TV L +WDTAGQE +  +    YRGA   +L + + S+ +Y +++  W+ + +  A P + +IL G K DL  +++
Sbjct:   10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLDPERE 130          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB31_HUMAN (Ras-related protein Rab-31 OS=Homo sapiens GN=RAB31 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 44/148 (29.73%), Postives = 79/148 (53.38%), Query Frame = 1
Query:   73 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGL-WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGTKLDLRD-------DKQFFIDHPGAVPISTA 489
            A R +K   +GD  VGK+ ++  +  + F  +  PT+  +F    V  G+ ++  L WDTAGQE ++ L P+ YRG+   ++ + +  + S+  + KKW+ ELK + P  + + + G K DL D       D + + +  GA+ + T+
Sbjct:    2 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETS 148          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB14_RAT (Ras-related protein Rab-14 OS=Rattus norvegicus GN=Rab14 PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 40/121 (33.06%), Postives = 66/121 (54.55%), Query Frame = 1
Query:   76 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDL 432
            S   K + +GD  VGK+CLL  +T   F  D   T+   F   ++ V+G  + L +WDTAGQE +  +    YRGA   ++ + +  +++Y ++S  W+ + ++   P   IIL+G K DL
Sbjct:    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADL 128          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB14_PONAB (Ras-related protein Rab-14 OS=Pongo abelii GN=RAB14 PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 40/121 (33.06%), Postives = 66/121 (54.55%), Query Frame = 1
Query:   76 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDL 432
            S   K + +GD  VGK+CLL  +T   F  D   T+   F   ++ V+G  + L +WDTAGQE +  +    YRGA   ++ + +  +++Y ++S  W+ + ++   P   IIL+G K DL
Sbjct:    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADL 128          
The following BLAST results are available for this feature:
BLAST of CX286794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASU_DICDI1.463e-1334.17Ras-like protein rasU OS=Dictyostelium discoideum ... [more]
RABM_DICDI1.463e-1330.95Ras-related protein RabM OS=Dictyostelium discoide... [more]
RAB8B_DICDI1.463e-1329.51Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
RAB4B_RAT1.463e-1334.43Ras-related protein Rab-4B OS=Rattus norvegicus GN... [more]
RAB4B_MOUSE1.463e-1334.43Ras-related protein Rab-4B OS=Mus musculus GN=Rab4... [more]
RAB4B_HUMAN1.463e-1334.43Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4... [more]
RAB4B_CANFA1.463e-1334.43Ras-related protein Rab-4B OS=Canis familiaris GN=... [more]
RAB31_HUMAN1.463e-1329.73Ras-related protein Rab-31 OS=Homo sapiens GN=RAB3... [more]
RAB14_RAT1.463e-1333.06Ras-related protein Rab-14 OS=Rattus norvegicus GN... [more]
RAB14_PONAB1.463e-1333.06Ras-related protein Rab-14 OS=Pongo abelii GN=RAB1... [more]

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Properties
Property NameValue
Genbank descriptionC01001B03Rv Veg1 Citrus clementina cDNA clone C01001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286794 ID=CX286794; Name=CX286794; organism=Citrus clementina; type=EST; length=551bp
TTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAAAAGCCACTGTC
TTAAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAGTGCGTGACGG
TTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTCTTACACCAGC
AACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATAATTTCAGTGC
AAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTATGGGATACTG
CTGGACAAGAGGATTATAACAGATTAAGACCTTTAAGTTACCGTGGTGCA
GATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAAGTTATGAAAA
TGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCTGGTGTGC
CAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGATAAGCAGTTC
TTCATTGACCATCCAGGTGCCGTGCCCATTAGTACAGCTCACGGGGAGGA
GCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGCAGTTCAAAAA
C
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