CX286794

Overview
NameCX286794
Unique NameCX286794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB14_PIG (Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 40/121 (33.06%), Postives = 66/121 (54.55%), Query Frame = 1
Query:   76 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDL 432
            S   K + +GD  VGK+CLL  +T   F  D   T+   F   ++ V+G  + L +WDTAGQE +  +    YRGA   ++ + +  +++Y ++S  W+ + ++   P   IIL+G K DL
Sbjct:    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADL 128          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB14_MOUSE (Ras-related protein Rab-14 OS=Mus musculus GN=Rab14 PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 40/121 (33.06%), Postives = 66/121 (54.55%), Query Frame = 1
Query:   76 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDL 432
            S   K + +GD  VGK+CLL  +T   F  D   T+   F   ++ V+G  + L +WDTAGQE +  +    YRGA   ++ + +  +++Y ++S  W+ + ++   P   IIL+G K DL
Sbjct:    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADL 128          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB14_HUMAN (Ras-related protein Rab-14 OS=Homo sapiens GN=RAB14 PE=1 SV=4)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 40/121 (33.06%), Postives = 66/121 (54.55%), Query Frame = 1
Query:   76 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDL 432
            S   K + +GD  VGK+CLL  +T   F  D   T+   F   ++ V+G  + L +WDTAGQE +  +    YRGA   ++ + +  +++Y ++S  W+ + ++   P   IIL+G K DL
Sbjct:    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADL 128          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB14_CHICK (Ras-related protein Rab-14 OS=Gallus gallus GN=RAB14 PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 40/121 (33.06%), Postives = 66/121 (54.55%), Query Frame = 1
Query:   76 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDL 432
            S   K + +GD  VGK+CLL  +T   F  D   T+   F   ++ V+G  + L +WDTAGQE +  +    YRGA   ++ + +  +++Y ++S  W+ + ++   P   IIL+G K DL
Sbjct:    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADL 128          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB12_MOUSE (Ras-related protein Rab-12 OS=Mus musculus GN=Rab12 PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 48/157 (30.57%), Postives = 78/157 (49.68%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            ++ + +G   VGKT L+  +T +TF      TV  +F    V + G  + L +WDTAGQE +N +    YR A   IL + +  K +++++  KW+  +  YA     ++LVG KLD   D++          IS   GE+  + I    + E S+K
Sbjct:   42 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ISRQQGEKFAQQITGMRFCEASAK 187          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RIT1_MOUSE (GTP-binding protein Rit1 OS=Mus musculus GN=Rit1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.910e-13
Identity = 39/125 (31.20%), Postives = 67/125 (53.60%), Query Frame = 1
Query:   76 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSK-KWIPELKHYAPGVPIILVGTKLDLRDDKQ 447
            SR  K V +G G VGK+ + + + S+ FP D+ PT+ D +   + ++    NL + DTAGQ ++  +R    R  + FI+ +S+  + S+  V + K +          P++LVG K DL+  +Q
Sbjct:   19 SREYKLVMLGAGGVGKSAMTMQFISHRFPEDHDPTIEDAYKIRIRIDDEPANLDILDTAGQAEFTAMRDQYMRAGEGFIICYSITDRRSFHEVREFKQLIYRVRRTDDTPVVLVGNKSDLKQLRQ 143          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RIT1_HUMAN (GTP-binding protein Rit1 OS=Homo sapiens GN=RIT1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.910e-13
Identity = 39/125 (31.20%), Postives = 67/125 (53.60%), Query Frame = 1
Query:   76 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSK-KWIPELKHYAPGVPIILVGTKLDLRDDKQ 447
            SR  K V +G G VGK+ + + + S+ FP D+ PT+ D +   + ++    NL + DTAGQ ++  +R    R  + FI+ +S+  + S+  V + K +          P++LVG K DL+  +Q
Sbjct:   19 SREYKLVMLGAGGVGKSAMTMQFISHRFPEDHDPTIEDAYKIRIRIDDEPANLDILDTAGQAEFTAMRDQYMRAGEGFIICYSITDRRSFHEVREFKQLIYRVRRTDDTPVVLVGNKSDLKQLRQ 143          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RB18B_DANRE (Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.910e-13
Identity = 39/124 (31.45%), Postives = 72/124 (58.06%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPII--LVGTKLDLRDDKQ 447
            +K + +G+  VGK+ LL+ +T +TF  +   T+  +F    + ++G+   L +WDTAGQE +  L P  YRGA   IL + +  + ++  + + W+ EL+ Y     ++  LVG K+D +D+++
Sbjct:    9 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAIDGNRAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTKRDTFTKL-ENWLNELETYCTRNDLVKMLVGNKID-KDNRE 130          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.910e-13
Identity = 41/117 (35.04%), Postives = 67/117 (57.26%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSAN-VVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDL 432
            K V +GD AVGK+ +L  +  N F  D   T+   F    +V++  TV   +WDTAGQE Y  +    YRGA   +L + +  + +++++  +W+ EL+++A   + IIL+G K DL
Sbjct:   19 KVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHI-PRWLEELRNHADKNIVIILIGNKCDL 134          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB17_HUMAN (Ras-related protein Rab-17 OS=Homo sapiens GN=RAB17 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.910e-13
Identity = 48/129 (37.21%), Postives = 76/129 (58.91%), Query Frame = 1
Query:   70 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGST-VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPG-VPIILVGTKLDLRDDKQ 447
            S  R  K V +G G+VGK+ L + Y  N F +  +PTV   F   VV  G+T + L +WDTAGQE Y+ +  L +RGA+  +L + +  K S+   +++W+ +L +   PG V ++LVG K DL  +++
Sbjct:   15 SQPRVFKLVLLGSGSVGKSSLALRYVKNDFKS-ILPTVGCAFFTKVVDVGATSLKLEIWDTAGQEKYHSVCHLYFRGANAALLVYDITRKDSFLK-AQQWLKDLEEELHPGEVLVMLVGNKTDLSQERE 141          
The following BLAST results are available for this feature:
BLAST of CX286794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB14_PIG1.463e-1333.06Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 ... [more]
RAB14_MOUSE1.463e-1333.06Ras-related protein Rab-14 OS=Mus musculus GN=Rab1... [more]
RAB14_HUMAN1.463e-1333.06Ras-related protein Rab-14 OS=Homo sapiens GN=RAB1... [more]
RAB14_CHICK1.463e-1333.06Ras-related protein Rab-14 OS=Gallus gallus GN=RAB... [more]
RAB12_MOUSE1.463e-1330.57Ras-related protein Rab-12 OS=Mus musculus GN=Rab1... [more]
RIT1_MOUSE1.910e-1331.20GTP-binding protein Rit1 OS=Mus musculus GN=Rit1 P... [more]
RIT1_HUMAN1.910e-1331.20GTP-binding protein Rit1 OS=Homo sapiens GN=RIT1 P... [more]
RB18B_DANRE1.910e-1331.45Ras-related protein Rab-18-B OS=Danio rerio GN=rab... [more]
RB11A_LOTJA1.910e-1335.04Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
RAB17_HUMAN1.910e-1337.21Ras-related protein Rab-17 OS=Homo sapiens GN=RAB1... [more]

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Properties
Property NameValue
Genbank descriptionC01001B03Rv Veg1 Citrus clementina cDNA clone C01001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286794 ID=CX286794; Name=CX286794; organism=Citrus clementina; type=EST; length=551bp
TTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAAAAGCCACTGTC
TTAAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAGTGCGTGACGG
TTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTCTTACACCAGC
AACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATAATTTCAGTGC
AAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTATGGGATACTG
CTGGACAAGAGGATTATAACAGATTAAGACCTTTAAGTTACCGTGGTGCA
GATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAAGTTATGAAAA
TGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCTGGTGTGC
CAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGATAAGCAGTTC
TTCATTGACCATCCAGGTGCCGTGCCCATTAGTACAGCTCACGGGGAGGA
GCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGCAGTTCAAAAA
C
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