CX286794

Overview
NameCX286794
Unique NameCX286794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.495e-13
Identity = 41/118 (34.75%), Postives = 67/118 (56.78%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 435
            K V +GD  VGK+ +L  +T N F  +   T+   F+   + V G TV   +WDTAGQE Y  +    YRGA   +L + +  + +++NV ++W+ EL+ +A   + I++ G K DL+
Sbjct:   14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-QRWLRELRDHADSNIVIMMAGNKSDLK 130          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAP1B_DANRE (Ras-related protein Rap-1b OS=Danio rerio GN=rap1b PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.495e-13
Identity = 46/159 (28.93%), Postives = 80/159 (50.31%), Query Frame = 1
Query:   79 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            R  K V +G G VGK+ L + +    F   Y PT+ D++   V V+G    L + DTAG E +  +R L  +    F L +S+ +++++ ++   ++ I  +K     VP+ILVG K DL D++           +    G+ L +   + A++E S+K
Sbjct:    2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TDDVPMILVGNKCDLEDER----------VVGKEQGQNLARQWNSCAFLESSAK 149          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB5A_PIG (Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.495e-13
Identity = 42/121 (34.71%), Postives = 68/121 (56.20%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDK 444
            K V +G+ AVGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAGQE Y+ L P+ YRGA   I+ + + ++ S+   +K W+ EL+  A P + I L G K DL + +
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR 141          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB5A_MOUSE (Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.495e-13
Identity = 42/121 (34.71%), Postives = 68/121 (56.20%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDK 444
            K V +G+ AVGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAGQE Y+ L P+ YRGA   I+ + + ++ S+   +K W+ EL+  A P + I L G K DL + +
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR 141          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB5A_MACFA (Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.495e-13
Identity = 42/121 (34.71%), Postives = 68/121 (56.20%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDK 444
            K V +G+ AVGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAGQE Y+ L P+ YRGA   I+ + + ++ S+   +K W+ EL+  A P + I L G K DL + +
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR 141          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB5A_HUMAN (Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.495e-13
Identity = 42/121 (34.71%), Postives = 68/121 (56.20%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDK 444
            K V +G+ AVGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAGQE Y+ L P+ YRGA   I+ + + ++ S+   +K W+ EL+  A P + I L G K DL + +
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR 141          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB5A_CANFA (Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.495e-13
Identity = 42/121 (34.71%), Postives = 68/121 (56.20%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDK 444
            K V +G+ AVGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAGQE Y+ L P+ YRGA   I+ + + ++ S+   +K W+ EL+  A P + I L G K DL + +
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR 141          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB5A_BOVIN (Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.495e-13
Identity = 42/121 (34.71%), Postives = 68/121 (56.20%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDK 444
            K V +G+ AVGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAGQE Y+ L P+ YRGA   I+ + + ++ S+   +K W+ EL+  A P + I L G K DL + +
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR 141          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB26_DROME (Ras-related protein Rab-26 OS=Drosophila melanogaster GN=Rab26 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.495e-13
Identity = 41/117 (35.04%), Postives = 63/117 (53.85%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSAN--VVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLD 429
            K + +GD  VGKT  L+ Y +  F              N  VVV+G+ V L +WDTAGQE +  +    YR A   +L + + +K +Y+N+ + W+ E++ YA   V I+L+G K D
Sbjct:  192 KTILLGDSGVGKTSFLVKYNTGEFRLGSFSATVGIALTNKVVVVDGTRVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKTTYDNI-RAWLGEIREYAQEDVVIVLIGNKAD 307          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB18_RAT (Ras-related protein Rab-18 OS=Rattus norvegicus GN=Rab18 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.495e-13
Identity = 40/118 (33.90%), Postives = 66/118 (55.93%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPII--LVGTKLD 429
            +K + +G+  VGK+ LL+ +T +TF  +   T+  +F    + V+G+   L +WDTAGQE +  L P  YRGA   IL + +  + ++  +   W+ EL+ Y     I+  LVG K+D
Sbjct:    9 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLD-NWLNELETYCTRNDIVNMLVGNKID 125          
The following BLAST results are available for this feature:
BLAST of CX286794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB2BV_BETVU2.495e-1334.75Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RAP1B_DANRE2.495e-1328.93Ras-related protein Rap-1b OS=Danio rerio GN=rap1b... [more]
RAB5A_PIG2.495e-1334.71Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A ... [more]
RAB5A_MOUSE2.495e-1334.71Ras-related protein Rab-5A OS=Mus musculus GN=Rab5... [more]
RAB5A_MACFA2.495e-1334.71Ras-related protein Rab-5A OS=Macaca fascicularis ... [more]
RAB5A_HUMAN2.495e-1334.71Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5... [more]
RAB5A_CANFA2.495e-1334.71Ras-related protein Rab-5A OS=Canis familiaris GN=... [more]
RAB5A_BOVIN2.495e-1334.71Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A ... [more]
RAB26_DROME2.495e-1335.04Ras-related protein Rab-26 OS=Drosophila melanogas... [more]
RAB18_RAT2.495e-1333.90Ras-related protein Rab-18 OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionC01001B03Rv Veg1 Citrus clementina cDNA clone C01001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286794 ID=CX286794; Name=CX286794; organism=Citrus clementina; type=EST; length=551bp
TTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAAAAGCCACTGTC
TTAAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAGTGCGTGACGG
TTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTCTTACACCAGC
AACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATAATTTCAGTGC
AAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTATGGGATACTG
CTGGACAAGAGGATTATAACAGATTAAGACCTTTAAGTTACCGTGGTGCA
GATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAAGTTATGAAAA
TGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCTGGTGTGC
CAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGATAAGCAGTTC
TTCATTGACCATCCAGGTGCCGTGCCCATTAGTACAGCTCACGGGGAGGA
GCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGCAGTTCAAAAA
C
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