CX286802

Overview
NameCX286802
Unique NameCX286802
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX286802_ssr61 microsatellite CX286802_ssr61:61..72. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_BACA2 (Chaperone protein dnaJ OS=Bacillus amyloliquefaciens (strain FZB42) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.606e-15
Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNFLRDV 498
            YEVLGV+ SA+ DEIK+AYRKL+ KYHPD+NKE  A+EKF  +K AY  L + + R +YD    T       G      D   +GF +    +
Sbjct:    7 YEVLGVSKSASKDEIKKAYRKLSKKYHPDINKESGADEKFKEVKEAYEALSDDQKRAQYDQFGHTDPNQGFGGGFGGGGDFGGFGFDDIFSSI 99          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_SYNJA (Chaperone protein dnaJ OS=Synechococcus sp. (strain JA-3-3Ab) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.097e-15
Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNF 486
            YE+LGV+  ++ +EIKRAYR+LA KYHPDVNKEP AE++F  I  AY  L + E R +YD   R  +   S   +  +  ++F G G F
Sbjct:    6 YEILGVSRDSSKEEIKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDDELRARYD---RFGEAGLSGAAAAASGFQDFAGIGGF 91          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_BREBN (Chaperone protein dnaJ OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.097e-15
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD 399
            YEVLGVA  A ADEIK+AYRKLA +YHPDVNKE +AEEKF  +K AY+ L   + R +YD
Sbjct:    6 YEVLGVAKDADADEIKKAYRKLARQYHPDVNKEADAEEKFKEVKDAYDILSEPQKRAQYD 65          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_OCEIH (Chaperone protein dnaJ OS=Oceanobacillus iheyensis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.739e-15
Identity = 44/92 (47.83%), Postives = 58/92 (63.04%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD----SGNRTSDFSYSTGPSQNAQDEEFYGFGN 483
            YE+LG+  SA+ DEIK+ YRKLA KYHPDVNKE +A EKF  +K AY  L + + R +YD    SG ++  F    G +Q     +F GFG+
Sbjct:    7 YEILGIDKSASQDEIKKNYRKLARKYHPDVNKEADAAEKFKEVKEAYEVLSDDQKRAQYDQFGHSGPQSQGFGGFGGGAQ-----DFGGFGD 93          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_MESFL (Chaperone protein dnaJ OS=Mesoplasma florum GN=dnaJ PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.739e-15
Identity = 48/105 (45.71%), Postives = 61/105 (58.10%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDS-GNRTSDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDL 531
            YEVLGV+ ++T  EIK AYRKLA KYHPD+NKE  AEEKF  +  A + LL+++ + KYD  G+   D S   G S         GFG F        EDFF ++
Sbjct:    7 YEVLGVSKTSTEQEIKSAYRKLAKKYHPDMNKESGAEEKFKEVNEAASVLLDADKKAKYDQFGHAAFDGSSGFGGS---------GFGGF--------EDFFSNM 94          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_BACHD (Chaperone protein dnaJ OS=Bacillus halodurans GN=dnaJ PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.739e-15
Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRT 414
            YEVLGV  +A+ADE+K+AYRKLA KYHPDVNK P+AE+KF  +K A++TL + + +  YD    T
Sbjct:    7 YEVLGVDRNASADEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAFDTLSDPQKKAHYDQFGHT 71          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNJB9_MOUSE (DnaJ homolog subfamily B member 9 OS=Mus musculus GN=Dnajb9 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.577e-15
Identity = 45/113 (39.82%), Postives = 64/113 (56.64%), Query Frame = 1
Query:  211 ESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQEEFQN 549
            +S Y++LGV  SA+  +IK+A+ KLA+KYHPD NK P+AE KF  I  AY TL ++ SR++YD+   +   +++ G  Q      F    NF        +D FKD     QN
Sbjct:   25 KSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANSRKEYDTIGHS---AFTNGKGQRGNGSPFEQSFNF------NFDDLFKDFNFFGQN 128          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_SYNP6 (Chaperone protein dnaJ OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.577e-15
Identity = 38/60 (63.33%), Postives = 44/60 (73.33%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD 399
            Y++LGVA  A  DEIKRAYR+LA KYHPDVNKEP AE+KF  I  AY  L   E+R +YD
Sbjct:    6 YQLLGVARDADKDEIKRAYRRLARKYHPDVNKEPGAEDKFKEINRAYEVLSEPETRARYD 65          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_LISW6 (Chaperone protein dnaJ OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.577e-15
Identity = 41/87 (47.13%), Postives = 55/87 (63.22%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDS-GNRTSDFSYSTGPSQNAQDEEFYGF 477
            YEVLG++ SA+ADEIK+AYRKL+ +YHPD+NKE  A+EKF  I  AY  L +S+ R +YD  G+   +  +  G         F GF
Sbjct:    7 YEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEVLSDSQKRAQYDQYGHVDPNQGFGGGAGGGFSGGGFSGF 93          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_ACAM1 (Chaperone protein dnaJ OS=Acaryochloris marina (strain MBIC 11017) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.577e-15
Identity = 41/89 (46.07%), Postives = 54/89 (60.67%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNF 486
            Y++LGV+ SA  DE+KR+YR+LA KYHPDVNKEP AE+KF  I  AY TL + + R +YD              +  A  ++F  FG F
Sbjct:    6 YDILGVSRSADPDELKRSYRRLARKYHPDVNKEPGAEDKFKEINKAYETLSDPQMRGRYDQFGEA-----GVSSAAGAGYQDFGDFGGF 89          
The following BLAST results are available for this feature:
BLAST of CX286802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
DNAJ_BACA21.606e-1544.09Chaperone protein dnaJ OS=Bacillus amyloliquefacie... [more]
DNAJ_SYNJA2.097e-1546.07Chaperone protein dnaJ OS=Synechococcus sp. (strai... [more]
DNAJ_BREBN2.097e-1565.00Chaperone protein dnaJ OS=Brevibacillus brevis (st... [more]
DNAJ_OCEIH2.739e-1547.83Chaperone protein dnaJ OS=Oceanobacillus iheyensis... [more]
DNAJ_MESFL2.739e-1545.71Chaperone protein dnaJ OS=Mesoplasma florum GN=dna... [more]
DNAJ_BACHD2.739e-1556.92Chaperone protein dnaJ OS=Bacillus halodurans GN=d... [more]
DNJB9_MOUSE3.577e-1539.82DnaJ homolog subfamily B member 9 OS=Mus musculus ... [more]
DNAJ_SYNP63.577e-1563.33Chaperone protein dnaJ OS=Synechococcus sp. (strai... [more]
DNAJ_LISW63.577e-1547.13Chaperone protein dnaJ OS=Listeria welshimeri sero... [more]
DNAJ_ACAM13.577e-1546.07Chaperone protein dnaJ OS=Acaryochloris marina (st... [more]

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Properties
Property NameValue
Genbank descriptionC01001B11Rv Veg1 Citrus clementina cDNA clone C01001B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286802 ID=CX286802; Name=CX286802; organism=Citrus clementina; type=EST; length=555bp
GACAACACGCTTGTCTATCTCCCTCATCTGTTCGCAAAATCTCCTCTTTT
TCACTTTCAGAAACAAACAAACTTCACAGTAACAATACCCAGTTGCAGAT
TTAGCTATGGTGATGAATTTGGTGTCCTCTTAGTTAGTCCGCAGCCTTTT
AGAAATTTTAAGAAGAAGAGGAGAAGCAATTTTAGTACCCTTTTGAGGGC
AAGTCGCAGAGAGTCCCCTTACGAGGTTTTGGGCGTGGCTCCATCTGCGA
CTGCTGATGAAATCAAAAGGGCTTATCGGAAACTTGCTTTGAAGTATCAC
CCTGACGTTAATAAAGAGCCAAATGCAGAGGAGAAATTTATGAGGATTAA
GCATGCATACAATACATTGCTGAATTCTGAGTCACGGAGGAAATATGACT
CTGGAAATCGCACATCAGATTTTTCCTACTCCACTGGCCCAAGCCAAAAT
GCGCAGGATGAAGAATTTTACGGATTTGGTAATTTTTTGAGGGATGTCCA
AATAACAATAGAGGACTTTTTCAAAGATCTTCAAGAAGAATTCCAGAATT
GGGAA
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