CX286802

Overview
NameCX286802
Unique NameCX286802
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_CUPTR (Chaperone protein dnaJ OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.399e-11
Identity = 40/90 (44.44%), Postives = 50/90 (55.56%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKE-PNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNF 486
            YEVLGV  +A+ DEIK+AYRKLA+K+HPD N +  +AEEKF   K AY  L + E +  YD            G    AQ     G+G F
Sbjct:    7 YEVLGVGKNASDDEIKKAYRKLAMKFHPDRNPDSKDAEEKFKEAKEAYEMLSDPEKKAAYDQYGHAGVDPNMAGGFGGAQ-----GYGGF 91          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_BORA1 (Chaperone protein dnaJ OS=Bordetella avium (strain 197N) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.399e-11
Identity = 35/61 (57.38%), Postives = 40/61 (65.57%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNK-EPNAEEKFMRIKHAYNTLLNSESRRKYD 399
            YEVLGVA  A  DE+K+AYRKLA+KYHPD N     AEEKF   K AY  L + + R  YD
Sbjct:    7 YEVLGVAKDAADDELKKAYRKLAMKYHPDRNPGNKEAEEKFKEAKEAYEVLGDEQKRAAYD 67          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: CBPA_PSEPW (Curved DNA-binding protein OS=Pseudomonas putida (strain W619) GN=cbpA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.399e-11
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD 399
            Y++LGV P+A    IK AYRKLA KYHPDV+KE +AEEKF     AY  L +++ R ++D
Sbjct:    7 YKILGVEPTADEKAIKAAYRKLARKYHPDVSKERDAEEKFKEANEAYEVLGDAQKRAEFD 66          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: CBPA_PSEPK (Curved DNA-binding protein OS=Pseudomonas putida (strain KT2440) GN=cbpA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.399e-11
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD 399
            Y++LGV P+A    IK AYRKLA KYHPDV+KE +AEEKF     AY  L +++ R ++D
Sbjct:    7 YKILGVEPTADEKAIKAAYRKLARKYHPDVSKERDAEEKFKEANEAYEVLGDAQKRAEFD 66          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: CBPA_PSEP1 (Curved DNA-binding protein OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=cbpA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.399e-11
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD 399
            Y++LGV P+A    IK AYRKLA KYHPDV+KE +AEEKF     AY  L +++ R ++D
Sbjct:    7 YKILGVEPTADEKAIKAAYRKLARKYHPDVSKERDAEEKFKEANEAYEVLGDAQKRAEFD 66          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: PSI1_SCHPO (Protein psi1 OS=Schizosaccharomyces pombe GN=psi1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.134e-11
Identity = 39/89 (43.82%), Postives = 49/89 (55.06%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNF 486
            Y+ L V P A+  E+K+AYRKLALKYHPD  K PN E+KF  I  AY  L + + R+ YD    T     +  P   A+     GFG F
Sbjct:    8 YDCLEVRPEASEAELKKAYRKLALKYHPD--KNPNGEKKFKEISLAYEVLSDPQRRKLYDQYGITE--GNAAPPPPGAEGGPGAGFGGF 92          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNJB8_HUMAN (DnaJ homolog subfamily B member 8 OS=Homo sapiens GN=DNAJB8 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.134e-11
Identity = 42/115 (36.52%), Postives = 61/115 (53.04%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVN--KEPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQE-EFQNWE 555
            YEVLGV  SA+ ++IK+AYRKLAL++HPD N   +  AE+KF  +  AY  L +S+ R  YD   R    S+  G   +      +  G   R+ +    +FF  L    F+ W+
Sbjct:    5 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYD---RAGCDSWRAGGGASTPYHSPFDTGYTFRNPEDIFREFFGGLDPFSFEFWD 116          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_WOLPM (Chaperone protein dnaJ OS=Wolbachia pipientis wMel GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.134e-11
Identity = 51/130 (39.23%), Postives = 68/130 (52.31%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNK-EPNAEEKFMRIKHAYNTLLNSESRRKYD-------SG-----NRTSDFS----------YSTGPSQNAQDEEFYGF-GNFLR-DVQITIEDFFKDLQ 534
            Y++L V  +A+ DEIK+AY+KLAL+YHPD N     AEEKF  +  AY  L +SE R  YD       SG     +   DFS          +  G S++       G  G  LR D++IT+ED FK +Q
Sbjct:    7 YDLLEVGRNASIDEIKKAYKKLALRYHPDRNPGNQEAEEKFKEVTAAYEVLSDSEKRAGYDRYGHEGASGGFQGFSSAGDFSDIFNDFFGGGFGGGASRSRAKRSTTGVSGADLRYDLEITLEDAFKGIQ 136          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_TREDE (Chaperone protein dnaJ OS=Treponema denticola GN=dnaJ PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.134e-11
Identity = 44/101 (43.56%), Postives = 58/101 (57.43%), Query Frame = 1
Query:  199 ASRRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNK-EPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTG----PSQNAQDEEFYGFGNF 486
            AS+R+  YEVLGV   A+ D+IK+AYRKLA+KYHPD N+ +  AEEKF     AY  L++ + R  YD          S G    PS     E+ +G G+F
Sbjct:    3 ASKRDY-YEVLGVDKKASNDDIKKAYRKLAIKYHPDKNQGDKAAEEKFKEATEAYEILIDEKKRSMYDQFGHAGVDGMSGGGGYDPSAFQGFEDIFG-GSF 101          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_RICFE (Chaperone protein dnaJ OS=Rickettsia felis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.134e-11
Identity = 38/104 (36.54%), Postives = 55/104 (52.88%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDS-GNRTSDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKD 528
            Y++LGV+ +A+  ++K+AY KLA +YHPD     +AE+KF  I  AY+ L + + R  YD  G+ T  +  S G   N         G F  D+     DFF D
Sbjct:    6 YQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINSAYDVLKDEQKRAAYDRFGHDTFQYQQSRGGGGN--------HGGFHPDINDIFGDFFSD 101          
The following BLAST results are available for this feature:
BLAST of CX286802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
DNAJ_CUPTR2.399e-1144.44Chaperone protein dnaJ OS=Cupriavidus taiwanensis ... [more]
DNAJ_BORA12.399e-1157.38Chaperone protein dnaJ OS=Bordetella avium (strain... [more]
CBPA_PSEPW2.399e-1153.33Curved DNA-binding protein OS=Pseudomonas putida (... [more]
CBPA_PSEPK2.399e-1153.33Curved DNA-binding protein OS=Pseudomonas putida (... [more]
CBPA_PSEP12.399e-1153.33Curved DNA-binding protein OS=Pseudomonas putida (... [more]
PSI1_SCHPO3.134e-1143.82Protein psi1 OS=Schizosaccharomyces pombe GN=psi1 ... [more]
DNJB8_HUMAN3.134e-1136.52DnaJ homolog subfamily B member 8 OS=Homo sapiens ... [more]
DNAJ_WOLPM3.134e-1139.23Chaperone protein dnaJ OS=Wolbachia pipientis wMel... [more]
DNAJ_TREDE3.134e-1143.56Chaperone protein dnaJ OS=Treponema denticola GN=d... [more]
DNAJ_RICFE3.134e-1136.54Chaperone protein dnaJ OS=Rickettsia felis GN=dnaJ... [more]

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Properties
Property NameValue
Genbank descriptionC01001B11Rv Veg1 Citrus clementina cDNA clone C01001B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286802 ID=CX286802; Name=CX286802; organism=Citrus clementina; type=EST; length=555bp
GACAACACGCTTGTCTATCTCCCTCATCTGTTCGCAAAATCTCCTCTTTT
TCACTTTCAGAAACAAACAAACTTCACAGTAACAATACCCAGTTGCAGAT
TTAGCTATGGTGATGAATTTGGTGTCCTCTTAGTTAGTCCGCAGCCTTTT
AGAAATTTTAAGAAGAAGAGGAGAAGCAATTTTAGTACCCTTTTGAGGGC
AAGTCGCAGAGAGTCCCCTTACGAGGTTTTGGGCGTGGCTCCATCTGCGA
CTGCTGATGAAATCAAAAGGGCTTATCGGAAACTTGCTTTGAAGTATCAC
CCTGACGTTAATAAAGAGCCAAATGCAGAGGAGAAATTTATGAGGATTAA
GCATGCATACAATACATTGCTGAATTCTGAGTCACGGAGGAAATATGACT
CTGGAAATCGCACATCAGATTTTTCCTACTCCACTGGCCCAAGCCAAAAT
GCGCAGGATGAAGAATTTTACGGATTTGGTAATTTTTTGAGGGATGTCCA
AATAACAATAGAGGACTTTTTCAAAGATCTTCAAGAAGAATTCCAGAATT
GGGAA
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