CX286802

Overview
NameCX286802
Unique NameCX286802
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLCH (Chaperone protein dnaJ OS=Chlorobium chlorochromatii (strain CaD3) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.345e-11
Identity = 32/61 (52.46%), Postives = 40/61 (65.57%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNK-EPNAEEKFMRIKHAYNTLLNSESRRKYD 399
            YE LGV  S+  D+IK+AYRKLA++YHPD N     AEE F  +  AY  L N + RR+YD
Sbjct:    6 YETLGVTRSSNKDDIKKAYRKLAVQYHPDKNPGNKEAEEHFKEVNEAYEVLSNDDKRRRYD 66          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_BORPE (Chaperone protein dnaJ OS=Bordetella pertussis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.345e-11
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKE-PNAEEKFMRIKHAYNTLLNSESRRKYD 399
            YEVLGVA +A+ +++K+AYRKLA+KYHPD N +   AEEKF   K AY  L + + R  YD
Sbjct:    7 YEVLGVAKNASDEDLKKAYRKLAMKYHPDRNPDSKEAEEKFKEAKEAYEVLGDEQKRAAYD 67          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_BORPA (Chaperone protein dnaJ OS=Bordetella parapertussis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.345e-11
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKE-PNAEEKFMRIKHAYNTLLNSESRRKYD 399
            YEVLGVA +A+ +++K+AYRKLA+KYHPD N +   AEEKF   K AY  L + + R  YD
Sbjct:    7 YEVLGVAKNASDEDLKKAYRKLAMKYHPDRNPDSKEAEEKFKEAKEAYEVLGDEQKRAAYD 67          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_BORBR (Chaperone protein dnaJ OS=Bordetella bronchiseptica GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.345e-11
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKE-PNAEEKFMRIKHAYNTLLNSESRRKYD 399
            YEVLGVA +A+ +++K+AYRKLA+KYHPD N +   AEEKF   K AY  L + + R  YD
Sbjct:    7 YEVLGVAKNASDEDLKKAYRKLAMKYHPDRNPDSKEAEEKFKEAKEAYEVLGDEQKRAAYD 67          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_ACIAC (Chaperone protein dnaJ OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.345e-11
Identity = 41/96 (42.71%), Postives = 51/96 (53.12%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNK---EPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNFLRDV 498
            YEVLGV  +A+ +EIK+AYRKLA+K+HPD N+      AEEKF   K AY  L + + R  YD            GP   A  E F GF     D+
Sbjct:    7 YEVLGVPKNASDEEIKKAYRKLAMKHHPDRNQGDAAKPAEEKFKEAKEAYEMLSDPQKRAAYDQFGHAGVDPNMRGPG-GAGAEGFGGFAEAFGDI 101          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ2_SYNY3 (Chaperone protein dnaJ 2 OS=Synechocystis sp. (strain PCC 6803) GN=dnaJ2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.345e-11
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVN-KEPNAEEKFMRIKHAYNTLLNSESRRKYDS 402
            Y++LGV  +ATA+EIK+++RKLA +YHPDVN  +  AEEKF  I  AY+ L +   RR+ DS
Sbjct:    8 YQILGVPRNATAEEIKKSFRKLARQYHPDVNPNDKTAEEKFKDINEAYDVLSDETKRRELDS 69          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: CBPA_ECOSM (Curved DNA-binding protein OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=cbpA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.345e-11
Identity = 34/87 (39.08%), Postives = 49/87 (56.32%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD-------SGNRTSDFSYSTGPSQNAQD 459
            Y ++GV P+     IK AYR+LA KYHPDV+KEP+AE +F  +  A+  L + + R +YD           +  F +  G S NA+D
Sbjct:    7 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFSRQFQHGDGQSFNAED 93          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: CBPA_ECOLU (Curved DNA-binding protein OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=cbpA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.345e-11
Identity = 34/87 (39.08%), Postives = 49/87 (56.32%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD-------SGNRTSDFSYSTGPSQNAQD 459
            Y ++GV P+     IK AYR+LA KYHPDV+KEP+AE +F  +  A+  L + + R +YD           +  F +  G S NA+D
Sbjct:    7 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFSRQFQHGDGQSFNAED 93          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: CBPA_ECO7I (Curved DNA-binding protein OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=cbpA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.345e-11
Identity = 34/87 (39.08%), Postives = 49/87 (56.32%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD-------SGNRTSDFSYSTGPSQNAQD 459
            Y ++GV P+     IK AYR+LA KYHPDV+KEP+AE +F  +  A+  L + + R +YD           +  F +  G S NA+D
Sbjct:    7 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFSRQFQHGDGQSFNAED 93          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: CBPA_ECO5E (Curved DNA-binding protein OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=cbpA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.345e-11
Identity = 34/87 (39.08%), Postives = 49/87 (56.32%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD-------SGNRTSDFSYSTGPSQNAQD 459
            Y ++GV P+     IK AYR+LA KYHPDV+KEP+AE +F  +  A+  L + + R +YD           +  F +  G S NA+D
Sbjct:    7 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFSRQFQHGDGQSFNAED 93          
The following BLAST results are available for this feature:
BLAST of CX286802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
DNAJ_CHLCH5.345e-1152.46Chaperone protein dnaJ OS=Chlorobium chlorochromat... [more]
DNAJ_BORPE5.345e-1154.10Chaperone protein dnaJ OS=Bordetella pertussis GN=... [more]
DNAJ_BORPA5.345e-1154.10Chaperone protein dnaJ OS=Bordetella parapertussis... [more]
DNAJ_BORBR5.345e-1154.10Chaperone protein dnaJ OS=Bordetella bronchiseptic... [more]
DNAJ_ACIAC5.345e-1142.71Chaperone protein dnaJ OS=Acidovorax avenae subsp.... [more]
DNAJ2_SYNY35.345e-1153.23Chaperone protein dnaJ 2 OS=Synechocystis sp. (str... [more]
CBPA_ECOSM5.345e-1139.08Curved DNA-binding protein OS=Escherichia coli (st... [more]
CBPA_ECOLU5.345e-1139.08Curved DNA-binding protein OS=Escherichia coli O17... [more]
CBPA_ECO7I5.345e-1139.08Curved DNA-binding protein OS=Escherichia coli O7:... [more]
CBPA_ECO5E5.345e-1139.08Curved DNA-binding protein OS=Escherichia coli O15... [more]

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Properties
Property NameValue
Genbank descriptionC01001B11Rv Veg1 Citrus clementina cDNA clone C01001B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286802 ID=CX286802; Name=CX286802; organism=Citrus clementina; type=EST; length=555bp
GACAACACGCTTGTCTATCTCCCTCATCTGTTCGCAAAATCTCCTCTTTT
TCACTTTCAGAAACAAACAAACTTCACAGTAACAATACCCAGTTGCAGAT
TTAGCTATGGTGATGAATTTGGTGTCCTCTTAGTTAGTCCGCAGCCTTTT
AGAAATTTTAAGAAGAAGAGGAGAAGCAATTTTAGTACCCTTTTGAGGGC
AAGTCGCAGAGAGTCCCCTTACGAGGTTTTGGGCGTGGCTCCATCTGCGA
CTGCTGATGAAATCAAAAGGGCTTATCGGAAACTTGCTTTGAAGTATCAC
CCTGACGTTAATAAAGAGCCAAATGCAGAGGAGAAATTTATGAGGATTAA
GCATGCATACAATACATTGCTGAATTCTGAGTCACGGAGGAAATATGACT
CTGGAAATCGCACATCAGATTTTTCCTACTCCACTGGCCCAAGCCAAAAT
GCGCAGGATGAAGAATTTTACGGATTTGGTAATTTTTTGAGGGATGTCCA
AATAACAATAGAGGACTTTTTCAAAGATCTTCAAGAAGAATTCCAGAATT
GGGAA
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