CX286802

Overview
NameCX286802
Unique NameCX286802
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: CBPA_ECO57 (Curved DNA-binding protein OS=Escherichia coli O157:H7 GN=cbpA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.345e-11
Identity = 34/87 (39.08%), Postives = 49/87 (56.32%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD-------SGNRTSDFSYSTGPSQNAQD 459
            Y ++GV P+     IK AYR+LA KYHPDV+KEP+AE +F  +  A+  L + + R +YD           +  F +  G S NA+D
Sbjct:    7 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFSRQFQHGDGQSFNAED 93          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNJB6_BOVIN (DnaJ homolog subfamily B member 6 OS=Bos taurus GN=DNAJB6 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.981e-11
Identity = 40/103 (38.83%), Postives = 57/103 (55.34%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKE--PNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFF 522
            YEVLGV   A+A++IK+AYRKLALK+HPD N E    AE KF ++  AY  L +++ R  YD   R      + G    +  +  + FG   R+ +    +FF
Sbjct:    5 YEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYD---RYGKEGLNGGGGGGSHFDSPFEFGFTFRNPEDVFREFF 104          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNJB4_PONAB (DnaJ homolog subfamily B member 4 OS=Pongo abelii GN=DNAJB4 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.981e-11
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD 399
            Y +LG+   A+ ++IK+AYRK ALK+HPD NK P AEEKF  +  AY  L + + R  YD
Sbjct:    6 YCILGIEKGASDEDIKKAYRKQALKFHPDKNKSPQAEEKFKEVAEAYEVLSDPKKREIYD 65          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNJB4_HUMAN (DnaJ homolog subfamily B member 4 OS=Homo sapiens GN=DNAJB4 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.981e-11
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD 399
            Y +LG+   A+ ++IK+AYRK ALK+HPD NK P AEEKF  +  AY  L + + R  YD
Sbjct:    6 YCILGIEKGASDEDIKKAYRKQALKFHPDKNKSPQAEEKFKEVAEAYEVLSDPKKREIYD 65          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNJ20_ARATH (Chaperone protein dnaJ 20, chloroplastic OS=Arabidopsis thaliana GN=ATJ20 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 6.981e-11
Identity = 42/110 (38.18%), Postives = 63/110 (57.27%), Query Frame = 1
Query:  148 FRNFKKKRRSNFSTLLRASRRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEE---KFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYS-TGPSQNAQDEE 465
            F + + + R      ++ S   S Y++LGV  S T  EIK+AY++LA KYHPDV+     EE   +F+R++ AY TL +   R  YD  + +  FS+S +G  QN  D+E
Sbjct:   44 FSSTRIQSRLTHDDPVKQSEDLSFYDLLGVTESVTLPEIKQAYKQLARKYHPDVSPPDRVEEYTDRFIRVQEAYETLSDPRRRVLYDR-DLSMGFSFSFSGRRQNRYDQE 152          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_SHISS (Chaperone protein dnaJ OS=Shigella sonnei (strain Ss046) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.981e-11
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 1
Query:  208 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNK-EPNAEEKFMRIKHAYNTLLNSESRRKYD 399
            ++  YE+LGV+ +A   EIK+AY++LA+KYHPD N+ +  AE KF  IK AY  L +S+ R  YD
Sbjct:    3 KQDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYD 67          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_SHIDS (Chaperone protein dnaJ OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.981e-11
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 1
Query:  208 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNK-EPNAEEKFMRIKHAYNTLLNSESRRKYD 399
            ++  YE+LGV+ +A   EIK+AY++LA+KYHPD N+ +  AE KF  IK AY  L +S+ R  YD
Sbjct:    3 KQDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYD 67          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_SHIBS (Chaperone protein dnaJ OS=Shigella boydii serotype 4 (strain Sb227) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.981e-11
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 1
Query:  208 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNK-EPNAEEKFMRIKHAYNTLLNSESRRKYD 399
            ++  YE+LGV+ +A   EIK+AY++LA+KYHPD N+ +  AE KF  IK AY  L +S+ R  YD
Sbjct:    3 KQDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYD 67          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_SHIB3 (Chaperone protein dnaJ OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.981e-11
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 1
Query:  208 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNK-EPNAEEKFMRIKHAYNTLLNSESRRKYD 399
            ++  YE+LGV+ +A   EIK+AY++LA+KYHPD N+ +  AE KF  IK AY  L +S+ R  YD
Sbjct:    3 KQDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYD 67          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_PORG3 (Chaperone protein dnaJ OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.981e-11
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNK-EPNAEEKFMRIKHAYNTLLNSESRRKYD 399
            YEVLGV+ +AT DE+K+AYRK A++YHPD N  +  AEE F  +  AY+ L + E R +YD
Sbjct:    8 YEVLGVSKNATDDELKKAYRKKAIQYHPDKNPGDKEAEEHFKEVAEAYDVLSDPEKRSRYD 68          
The following BLAST results are available for this feature:
BLAST of CX286802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
CBPA_ECO575.345e-1139.08Curved DNA-binding protein OS=Escherichia coli O15... [more]
DNJB6_BOVIN6.981e-1138.83DnaJ homolog subfamily B member 6 OS=Bos taurus GN... [more]
DNJB4_PONAB6.981e-1150.00DnaJ homolog subfamily B member 4 OS=Pongo abelii ... [more]
DNJB4_HUMAN6.981e-1150.00DnaJ homolog subfamily B member 4 OS=Homo sapiens ... [more]
DNJ20_ARATH6.981e-1138.18Chaperone protein dnaJ 20, chloroplastic OS=Arabid... [more]
DNAJ_SHISS6.981e-1149.23Chaperone protein dnaJ OS=Shigella sonnei (strain ... [more]
DNAJ_SHIDS6.981e-1149.23Chaperone protein dnaJ OS=Shigella dysenteriae ser... [more]
DNAJ_SHIBS6.981e-1149.23Chaperone protein dnaJ OS=Shigella boydii serotype... [more]
DNAJ_SHIB36.981e-1149.23Chaperone protein dnaJ OS=Shigella boydii serotype... [more]
DNAJ_PORG36.981e-1152.46Chaperone protein dnaJ OS=Porphyromonas gingivalis... [more]

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Properties
Property NameValue
Genbank descriptionC01001B11Rv Veg1 Citrus clementina cDNA clone C01001B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286802 ID=CX286802; Name=CX286802; organism=Citrus clementina; type=EST; length=555bp
GACAACACGCTTGTCTATCTCCCTCATCTGTTCGCAAAATCTCCTCTTTT
TCACTTTCAGAAACAAACAAACTTCACAGTAACAATACCCAGTTGCAGAT
TTAGCTATGGTGATGAATTTGGTGTCCTCTTAGTTAGTCCGCAGCCTTTT
AGAAATTTTAAGAAGAAGAGGAGAAGCAATTTTAGTACCCTTTTGAGGGC
AAGTCGCAGAGAGTCCCCTTACGAGGTTTTGGGCGTGGCTCCATCTGCGA
CTGCTGATGAAATCAAAAGGGCTTATCGGAAACTTGCTTTGAAGTATCAC
CCTGACGTTAATAAAGAGCCAAATGCAGAGGAGAAATTTATGAGGATTAA
GCATGCATACAATACATTGCTGAATTCTGAGTCACGGAGGAAATATGACT
CTGGAAATCGCACATCAGATTTTTCCTACTCCACTGGCCCAAGCCAAAAT
GCGCAGGATGAAGAATTTTACGGATTTGGTAATTTTTTGAGGGATGTCCA
AATAACAATAGAGGACTTTTTCAAAGATCTTCAAGAAGAATTCCAGAATT
GGGAA
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