CX286802

Overview
NameCX286802
Unique NameCX286802
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: CBPA_PSEPG (Curved DNA-binding protein OS=Pseudomonas putida (strain GB-1) GN=cbpA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.981e-11
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD 399
            Y++LGV P+A    IK AYRKLA KYHPDV+KE +AE+KF     AY  L +++ R ++D
Sbjct:    7 YKILGVEPTADDKAIKAAYRKLARKYHPDVSKERDAEDKFKEANEAYEVLGDAQKRAEFD 66          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNJB6_CHICK (DnaJ homolog subfamily B member 6 OS=Gallus gallus GN=DNAJB6 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 45/118 (38.14%), Postives = 63/118 (53.39%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKE--PNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEF-YGFGN-------FLRDVQITIEDFFKDLQEEF 543
            YEVLGV   A+A++IK+AYRKLALK+HPD N E    AE++F ++  AY  L +++ R  YD   +    +   G S +    EF + F N       F         DFF+D  E+F
Sbjct:    5 YEVLGVQKHASAEDIKKAYRKLALKWHPDKNPENKEEAEQQFKQVAEAYEVLSDAKKRDIYDRFGKEGLINGGGGGSHHDNPFEFGFTFRNPDDVFREFFGGRDPFSFDFFEDPFEDF 122          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_STRMK (Chaperone protein dnaJ OS=Stenotrophomonas maltophilia (strain K279a) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 39/92 (42.39%), Postives = 51/92 (55.43%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNK-EPNAEEKFMRIKHAYNTLLNSESRRKYDS-GNRTSDFSYSTGPSQNAQDEEFYG--FGN 483
            YEVLGVA +AT DE+K+AYR+ A+K+HPD N  +  AE  F   K AY  L +   RR YDS G+   +     G        + +G  FGN
Sbjct:    7 YEVLGVARTATDDELKKAYRRCAMKFHPDRNPGDAAAEASFKECKEAYEVLSDGNKRRMYDSHGHAAFEHGMGGGGPGGPDMNDIFGDIFGN 98          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_SILPO (Chaperone protein dnaJ OS=Silicibacter pomeroyi GN=dnaJ PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 39/104 (37.50%), Postives = 55/104 (52.88%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKE-PNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKD 528
            Y+VLGV+  A+ADEIK+AYR  A + HPD NK+ P+AE  F  +  AY  L ++E +  YD   R    ++  G     +    +G G+F        ED F D
Sbjct:    7 YDVLGVSKGASADEIKKAYRGKAKELHPDRNKDNPDAESLFKEVNEAYEVLKDAEKKAAYD---RFGHAAFEGGMGGGQRPGGGFGSGDFSSAFSDVFEDLFGD 107          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_SACD2 (Chaperone protein dnaJ OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 30/61 (49.18%), Postives = 42/61 (68.85%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNK-EPNAEEKFMRIKHAYNTLLNSESRRKYD 399
            YEVLGV+   +  E+K+AYRK+A+KYHPD N  +PN+E+KF     AY  L +++ R  YD
Sbjct:    7 YEVLGVSKDVSPQELKKAYRKVAMKYHPDRNSDDPNSEDKFKEASEAYEVLSDAQKRAAYD 67          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_HAEDU (Chaperone protein dnaJ OS=Haemophilus ducreyi GN=dnaJ PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 40/105 (38.10%), Postives = 55/105 (52.38%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNK-EPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDL 531
            YEVLG+   AT  +IKRAY++LA KYHPD N+   ++EEKF +I  AY  L + + R  YD        ++  G S    +    GFG F        ED F ++
Sbjct:    7 YEVLGLQKGATEKDIKRAYKRLAAKYHPDKNQGSKDSEEKFKQITEAYEILTDDQKRAAYDQYGHA---AFEQGSSNGGFNGFGGGFGGF--------EDIFSEM 100          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_CLOPE (Chaperone protein dnaJ OS=Clostridium perfringens GN=dnaJ PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 39/91 (42.86%), Postives = 51/91 (56.04%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNK-EPNAEEKFMRIKHAYNTLLNSESRRKYDS-GNRTSDFSYSTGPSQNAQDEEFYGFGNF 486
            YEVLG+   A+ DEIKRA+RK+A+KYHPD N  +  AEE F  +  AY+ L + + + KYD  G+   D S   G           GFG F
Sbjct:    7 YEVLGLQKGASDDEIKRAFRKMAMKYHPDRNPGDKEAEENFKEVNEAYDVLKDPDKKAKYDQFGHAAFDGSGGFGGG---------GFGGF 88          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLCV (Chaperone protein dnaJ OS=Chlamydophila caviae GN=dnaJ PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 31/74 (41.89%), Postives = 48/74 (64.86%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNK-EPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTG 438
            Y+VLGV+ +A+ +EIK++YRKLA+KYHPD N  +  AE++F  +  AY  L + + R  YD   +   F+ + G
Sbjct:    4 YDVLGVSKTASPEEIKKSYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDPQKRESYDRYGKNGPFAGAGG 77          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLAB (Chaperone protein dnaJ OS=Chlamydophila abortus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 43/116 (37.07%), Postives = 61/116 (52.59%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNK-EPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTG----PSQNAQD--EEFYG-FGNFLRDVQITIEDFFKDLQEEF 543
            Y+VLGV+ +A+ +EIK++YRKLA+KYHPD N  +  AE++F  +  AY  L + + R  YD   +   F+ + G       N +D    F G FG  L       E  F  L E F
Sbjct:    4 YDVLGVSKTASPEEIKKSYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDPQKRESYDRYGKDGPFAGAGGFGGAGMSNMEDALRTFMGAFGGELGGSGSFFEGLFGGLGEAF 119          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_AERHH (Chaperone protein dnaJ OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNK-EPNAEEKFMRIKHAYNTLLNSESRRKYD 399
            YEVLGV+  A   EIK+AY++LA+KYHPD N+ +  AEEKF  +K AY  L ++  R +YD
Sbjct:    7 YEVLGVSKDADEREIKKAYKRLAMKYHPDRNQGDAGAEEKFKEVKEAYEILTDANLRARYD 67          
The following BLAST results are available for this feature:
BLAST of CX286802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
CBPA_PSEPG6.981e-1151.67Curved DNA-binding protein OS=Pseudomonas putida (... [more]
DNJB6_CHICK9.118e-1138.14DnaJ homolog subfamily B member 6 OS=Gallus gallus... [more]
DNAJ_STRMK9.118e-1142.39Chaperone protein dnaJ OS=Stenotrophomonas maltoph... [more]
DNAJ_SILPO9.118e-1137.50Chaperone protein dnaJ OS=Silicibacter pomeroyi GN... [more]
DNAJ_SACD29.118e-1149.18Chaperone protein dnaJ OS=Saccharophagus degradans... [more]
DNAJ_HAEDU9.118e-1138.10Chaperone protein dnaJ OS=Haemophilus ducreyi GN=d... [more]
DNAJ_CLOPE9.118e-1142.86Chaperone protein dnaJ OS=Clostridium perfringens ... [more]
DNAJ_CHLCV9.118e-1141.89Chaperone protein dnaJ OS=Chlamydophila caviae GN=... [more]
DNAJ_CHLAB9.118e-1137.07Chaperone protein dnaJ OS=Chlamydophila abortus GN... [more]
DNAJ_AERHH9.118e-1152.46Chaperone protein dnaJ OS=Aeromonas hydrophila sub... [more]

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Properties
Property NameValue
Genbank descriptionC01001B11Rv Veg1 Citrus clementina cDNA clone C01001B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286802 ID=CX286802; Name=CX286802; organism=Citrus clementina; type=EST; length=555bp
GACAACACGCTTGTCTATCTCCCTCATCTGTTCGCAAAATCTCCTCTTTT
TCACTTTCAGAAACAAACAAACTTCACAGTAACAATACCCAGTTGCAGAT
TTAGCTATGGTGATGAATTTGGTGTCCTCTTAGTTAGTCCGCAGCCTTTT
AGAAATTTTAAGAAGAAGAGGAGAAGCAATTTTAGTACCCTTTTGAGGGC
AAGTCGCAGAGAGTCCCCTTACGAGGTTTTGGGCGTGGCTCCATCTGCGA
CTGCTGATGAAATCAAAAGGGCTTATCGGAAACTTGCTTTGAAGTATCAC
CCTGACGTTAATAAAGAGCCAAATGCAGAGGAGAAATTTATGAGGATTAA
GCATGCATACAATACATTGCTGAATTCTGAGTCACGGAGGAAATATGACT
CTGGAAATCGCACATCAGATTTTTCCTACTCCACTGGCCCAAGCCAAAAT
GCGCAGGATGAAGAATTTTACGGATTTGGTAATTTTTTGAGGGATGTCCA
AATAACAATAGAGGACTTTTTCAAAGATCTTCAAGAAGAATTCCAGAATT
GGGAA
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