CX286802

Overview
NameCX286802
Unique NameCX286802
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: CBPA_SHISS (Curved DNA-binding protein OS=Shigella sonnei (strain Ss046) GN=cbpA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD-------SGNRTSDFSYSTGPSQNAQD 459
            Y ++GV P+     IK AYR+LA KYHPDV+KEP+AE +F  +  A+  L + + R +YD              F +  G S NA+D
Sbjct:    7 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNHQFHHGDGQSFNAED 93          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: CBPA_SHIFL (Curved DNA-binding protein OS=Shigella flexneri GN=cbpA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD-------SGNRTSDFSYSTGPSQNAQD 459
            Y ++GV P+     IK AYR+LA KYHPDV+KEP+AE +F  +  A+  L + + R +YD              F +  G S NA+D
Sbjct:    7 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAED 93          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: CBPA_SHIF8 (Curved DNA-binding protein OS=Shigella flexneri serotype 5b (strain 8401) GN=cbpA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD-------SGNRTSDFSYSTGPSQNAQD 459
            Y ++GV P+     IK AYR+LA KYHPDV+KEP+AE +F  +  A+  L + + R +YD              F +  G S NA+D
Sbjct:    7 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAED 93          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: CBPA_SHIBS (Curved DNA-binding protein OS=Shigella boydii serotype 4 (strain Sb227) GN=cbpA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD-------SGNRTSDFSYSTGPSQNAQD 459
            Y ++GV P+     IK AYR+LA KYHPDV+KEP+AE +F  +  A+  L + + R +YD              F +  G S NA+D
Sbjct:    7 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAED 93          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: CBPA_SHIB3 (Curved DNA-binding protein OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=cbpA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD-------SGNRTSDFSYSTGPSQNAQD 459
            Y ++GV P+     IK AYR+LA KYHPDV+KEP+AE +F  +  A+  L + + R +YD              F +  G S NA+D
Sbjct:    7 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAED 93          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: CBPA_PSEE4 (Curved DNA-binding protein OS=Pseudomonas entomophila (strain L48) GN=cbpA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD 399
            Y++LGV  SA    IK AYRKLA KYHPDV+KE +AE+KF     AY  L + + R +YD
Sbjct:    7 YKILGVEASADEKAIKAAYRKLARKYHPDVSKERDAEDKFKEANEAYEVLGDKDKRAEYD 66          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: CBPA_ESCF3 (Curved DNA-binding protein OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=cbpA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD-------SGNRTSDFSYSTGPSQNAQD 459
            Y ++GV P+     IK AYR+LA KYHPDV+KEP+AE +F  +  A+  L + + R +YD              F +  G S NA+D
Sbjct:    7 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAED 93          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: CBPA_ECOUT (Curved DNA-binding protein OS=Escherichia coli (strain UTI89 / UPEC) GN=cbpA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD-------SGNRTSDFSYSTGPSQNAQD 459
            Y ++GV P+     IK AYR+LA KYHPDV+KEP+AE +F  +  A+  L + + R +YD              F +  G S NA+D
Sbjct:    7 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAED 93          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: CBPA_ECOSE (Curved DNA-binding protein OS=Escherichia coli (strain SE11) GN=cbpA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD-------SGNRTSDFSYSTGPSQNAQD 459
            Y ++GV P+     IK AYR+LA KYHPDV+KEP+AE +F  +  A+  L + + R +YD              F +  G S NA+D
Sbjct:    7 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAED 93          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: CBPA_ECOLI (Curved DNA-binding protein OS=Escherichia coli (strain K12) GN=cbpA PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD-------SGNRTSDFSYSTGPSQNAQD 459
            Y ++GV P+     IK AYR+LA KYHPDV+KEP+AE +F  +  A+  L + + R +YD              F +  G S NA+D
Sbjct:    7 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAED 93          
The following BLAST results are available for this feature:
BLAST of CX286802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
CBPA_SHISS9.118e-1139.08Curved DNA-binding protein OS=Shigella sonnei (str... [more]
CBPA_SHIFL9.118e-1139.08Curved DNA-binding protein OS=Shigella flexneri GN... [more]
CBPA_SHIF89.118e-1139.08Curved DNA-binding protein OS=Shigella flexneri se... [more]
CBPA_SHIBS9.118e-1139.08Curved DNA-binding protein OS=Shigella boydii sero... [more]
CBPA_SHIB39.118e-1139.08Curved DNA-binding protein OS=Shigella boydii sero... [more]
CBPA_PSEE49.118e-1153.33Curved DNA-binding protein OS=Pseudomonas entomoph... [more]
CBPA_ESCF39.118e-1139.08Curved DNA-binding protein OS=Escherichia ferguson... [more]
CBPA_ECOUT9.118e-1139.08Curved DNA-binding protein OS=Escherichia coli (st... [more]
CBPA_ECOSE9.118e-1139.08Curved DNA-binding protein OS=Escherichia coli (st... [more]
CBPA_ECOLI9.118e-1139.08Curved DNA-binding protein OS=Escherichia coli (st... [more]

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Properties
Property NameValue
Genbank descriptionC01001B11Rv Veg1 Citrus clementina cDNA clone C01001B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286802 ID=CX286802; Name=CX286802; organism=Citrus clementina; type=EST; length=555bp
GACAACACGCTTGTCTATCTCCCTCATCTGTTCGCAAAATCTCCTCTTTT
TCACTTTCAGAAACAAACAAACTTCACAGTAACAATACCCAGTTGCAGAT
TTAGCTATGGTGATGAATTTGGTGTCCTCTTAGTTAGTCCGCAGCCTTTT
AGAAATTTTAAGAAGAAGAGGAGAAGCAATTTTAGTACCCTTTTGAGGGC
AAGTCGCAGAGAGTCCCCTTACGAGGTTTTGGGCGTGGCTCCATCTGCGA
CTGCTGATGAAATCAAAAGGGCTTATCGGAAACTTGCTTTGAAGTATCAC
CCTGACGTTAATAAAGAGCCAAATGCAGAGGAGAAATTTATGAGGATTAA
GCATGCATACAATACATTGCTGAATTCTGAGTCACGGAGGAAATATGACT
CTGGAAATCGCACATCAGATTTTTCCTACTCCACTGGCCCAAGCCAAAAT
GCGCAGGATGAAGAATTTTACGGATTTGGTAATTTTTTGAGGGATGTCCA
AATAACAATAGAGGACTTTTTCAAAGATCTTCAAGAAGAATTCCAGAATT
GGGAA
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