CX286802

Overview
NameCX286802
Unique NameCX286802
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: CBPA_ECOLC (Curved DNA-binding protein OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=cbpA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 1 
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD-------SGNRTSDFSYSTGPSQNAQD 459
            Y ++GV P+     IK AYR+LA KYHPDV+KEP+AE +F  +  A+  L + + R +YD              F +  G S NA+D
Sbjct:    7 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAED 93
[Close]
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: CBPA_ECOL6 (Curved DNA-binding protein OS=Escherichia coli O6 GN=cbpA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 1 
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD-------SGNRTSDFSYSTGPSQNAQD 459
            Y ++GV P+     IK AYR+LA KYHPDV+KEP+AE +F  +  A+  L + + R +YD              F +  G S NA+D
Sbjct:    7 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAED 93
[Close]
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: CBPA_ECOL5 (Curved DNA-binding protein OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=cbpA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 1 
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD-------SGNRTSDFSYSTGPSQNAQD 459
            Y ++GV P+     IK AYR+LA KYHPDV+KEP+AE +F  +  A+  L + + R +YD              F +  G S NA+D
Sbjct:    7 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAED 93
[Close]
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: CBPA_ECOK1 (Curved DNA-binding protein OS=Escherichia coli O1:K1 / APEC GN=cbpA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 1 
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD-------SGNRTSDFSYSTGPSQNAQD 459
            Y ++GV P+     IK AYR+LA KYHPDV+KEP+AE +F  +  A+  L + + R +YD              F +  G S NA+D
Sbjct:    7 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAED 93
[Close]
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: CBPA_ECOHS (Curved DNA-binding protein OS=Escherichia coli O9:H4 (strain HS) GN=cbpA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 1 
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD-------SGNRTSDFSYSTGPSQNAQD 459
            Y ++GV P+     IK AYR+LA KYHPDV+KEP+AE +F  +  A+  L + + R +YD              F +  G S NA+D
Sbjct:    7 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAED 93
[Close]
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: CBPA_ECODH (Curved DNA-binding protein OS=Escherichia coli (strain K12 / DH10B) GN=cbpA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 1 
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD-------SGNRTSDFSYSTGPSQNAQD 459
            Y ++GV P+     IK AYR+LA KYHPDV+KEP+AE +F  +  A+  L + + R +YD              F +  G S NA+D
Sbjct:    7 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAED 93
[Close]
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: CBPA_ECOBW (Curved DNA-binding protein OS=Escherichia coli (strain K12 / BW2952) GN=cbpA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 1 
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD-------SGNRTSDFSYSTGPSQNAQD 459
            Y ++GV P+     IK AYR+LA KYHPDV+KEP+AE +F  +  A+  L + + R +YD              F +  G S NA+D
Sbjct:    7 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAED 93
[Close]
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: CBPA_ECO8A (Curved DNA-binding protein OS=Escherichia coli O8 (strain IAI1) GN=cbpA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 1 
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD-------SGNRTSDFSYSTGPSQNAQD 459
            Y ++GV P+     IK AYR+LA KYHPDV+KEP+AE +F  +  A+  L + + R +YD              F +  G S NA+D
Sbjct:    7 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAED 93
[Close]
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: CBPA_ECO81 (Curved DNA-binding protein OS=Escherichia coli O81 (strain ED1a) GN=cbpA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 1 
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD-------SGNRTSDFSYSTGPSQNAQD 459
            Y ++GV P+     IK AYR+LA KYHPDV+KEP+AE +F  +  A+  L + + R +YD              F +  G S NA+D
Sbjct:    7 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAED 93
[Close]
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: CBPA_ECO45 (Curved DNA-binding protein OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=cbpA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 1 
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD-------SGNRTSDFSYSTGPSQNAQD 459
            Y ++GV P+     IK AYR+LA KYHPDV+KEP+AE +F  +  A+  L + + R +YD              F +  G S NA+D
Sbjct:    7 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAED 93
The following BLAST results are available for this feature:
BLAST of CX286802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
CBPA_ECOLC9.118e-1139.08Curved DNA-binding protein OS=Escherichia coli (st... [more]
CBPA_ECOL69.118e-1139.08Curved DNA-binding protein OS=Escherichia coli O6 ... [more]
CBPA_ECOL59.118e-1139.08Curved DNA-binding protein OS=Escherichia coli O6:... [more]
CBPA_ECOK19.118e-1139.08Curved DNA-binding protein OS=Escherichia coli O1:... [more]
CBPA_ECOHS9.118e-1139.08Curved DNA-binding protein OS=Escherichia coli O9:... [more]
CBPA_ECODH9.118e-1139.08Curved DNA-binding protein OS=Escherichia coli (st... [more]
CBPA_ECOBW9.118e-1139.08Curved DNA-binding protein OS=Escherichia coli (st... [more]
CBPA_ECO8A9.118e-1139.08Curved DNA-binding protein OS=Escherichia coli O8 ... [more]
CBPA_ECO819.118e-1139.08Curved DNA-binding protein OS=Escherichia coli O81... [more]
CBPA_ECO459.118e-1139.08Curved DNA-binding protein OS=Escherichia coli O45... [more]

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Properties
Property NameValue
Genbank descriptionC01001B11Rv Veg1 Citrus clementina cDNA clone C01001B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286802 ID=CX286802; Name=CX286802; organism=Citrus clementina; type=EST; length=555bp
GACAACACGCTTGTCTATCTCCCTCATCTGTTCGCAAAATCTCCTCTTTT
TCACTTTCAGAAACAAACAAACTTCACAGTAACAATACCCAGTTGCAGAT
TTAGCTATGGTGATGAATTTGGTGTCCTCTTAGTTAGTCCGCAGCCTTTT
AGAAATTTTAAGAAGAAGAGGAGAAGCAATTTTAGTACCCTTTTGAGGGC
AAGTCGCAGAGAGTCCCCTTACGAGGTTTTGGGCGTGGCTCCATCTGCGA
CTGCTGATGAAATCAAAAGGGCTTATCGGAAACTTGCTTTGAAGTATCAC
CCTGACGTTAATAAAGAGCCAAATGCAGAGGAGAAATTTATGAGGATTAA
GCATGCATACAATACATTGCTGAATTCTGAGTCACGGAGGAAATATGACT
CTGGAAATCGCACATCAGATTTTTCCTACTCCACTGGCCCAAGCCAAAAT
GCGCAGGATGAAGAATTTTACGGATTTGGTAATTTTTTGAGGGATGTCCA
AATAACAATAGAGGACTTTTTCAAAGATCTTCAAGAAGAATTCCAGAATT
GGGAA
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