CX286823

Overview
NameCX286823
Unique NameCX286823
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length600
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286823 vs. ExPASy Swiss-Prot
Match: LIP4_ARATH (GDSL esterase/lipase LIP-4 OS=Arabidopsis thaliana GN=LIP4 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.782e-11
Identity = 50/186 (26.88%), Postives = 85/186 (45.70%), Query Frame = 3
Query:   60 GANFASAGSGYDDRTSYLNHAISLTQQLQYYREYQSKLAKVAGSKQSASII-------KDAIYIVGSGSGDFLQNYYVNPLLNKVYTPEQYSSMLVNIFSSFIKNMYGLGARKFGVTSLPPLGCLPAARTLF---GYHESGCVSRINTDAQQFNKKVSSAATNLQKQLPDLKIVIFDIFKPIYDLV 587
            GANFA AGS     T   N   SL  Q++ +  ++S+  ++A S  S   +       K+A+Y++  G  D  +++      N      +    ++    S IK +Y  G R+F + +  PLGCLP   ++       + GC+   N+ A  FN+ +      L+ +L D  I+  DI+   Y L+
Sbjct:  112 GANFAIAGSP----TLPKNVPFSLNIQVKQFSHFKSRSLELASSSNSLKGMFISNNGFKNALYMIDIGQNDIARSFARG---NSYSQTVKLIPQIITEIKSSIKRLYDEGGRRFWIHNTGPLGCLPQKLSMVKSKDLDQHGCLVSYNSAATLFNQGLDHMCEELRTELRDATIIYIDIYAIKYSLI 290          
BLAST of CX286823 vs. ExPASy Swiss-Prot
Match: GDL91_ARATH (GDSL esterase/lipase At1g28640 OS=Arabidopsis thaliana GN=At1g28640 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.157e-11
Identity = 53/211 (25.12%), Postives = 97/211 (45.97%), Query Frame = 3
Query:    9 YAPAYLSPQATGKNLLIGANFASAGSGYDDRTSYLNHAI-------SLTQQLQYYREYQSKLAKVAGSKQSASIIKDAIYIVGS-GSGDFLQNYYVNPLLNKVYTPEQYSSMLVNIFSSFIKNMYGLGARKFGVTSLPPLGCLPAARTLFGY-----HE--SGCVSRINTDAQQFNKKVSSAATNLQKQLPDLKIVIFDIFKPIYDLVQSP 596
            Y P+Y   Q    +   G NFA  G+   DR   +   I       SL+ QL  +++    L   + S+    ++ D++ ++G  G  D+   ++    +N++   +Q   +++   SS I ++  LG + F V    PLGC PA  TLF       H+  +GC+ R+N   +  N+++ +    LQ+    + I+  D +  ++ L Q P
Sbjct:   96 YVPSYFGSQNVSFDQ--GINFAVYGATALDRVFLVGKGIESDFTNVSLSVQLNIFKQILPNLC-TSSSRDCREMLGDSLILMGEIGVNDYNYPFFEGKSINEI---KQLVPLVIKAISSAIVDLIDLGGKTFLVPGNFPLGCYPAYLTLFQTAAEEDHDPFTGCIPRLNEFGEYHNEQLKTELKRLQELYDHVNIIYADYYNSLFRLYQEP 300          
The following BLAST results are available for this feature:
BLAST of CX286823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
LIP4_ARATH4.782e-1126.88GDSL esterase/lipase LIP-4 OS=Arabidopsis thaliana... [more]
GDL91_ARATH8.157e-1125.12GDSL esterase/lipase At1g28640 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionC01001D12Rv Veg1 Citrus clementina cDNA clone C01001D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286823 ID=CX286823; Name=CX286823; organism=Citrus clementina; type=EST; length=600bp
TTAAGACTTATGCGCCAGCATATCTCAGCCCACAGGCTACAGGGAAAAAC
CTCCTTATTGGAGCCAACTTTGCTTCAGCGGGATCTGGTTATGATGACAG
GACATCCTACTTAAATCATGCAATTTCATTGACTCAGCAGTTGCAGTACT
ATAGAGAGTACCAGAGTAAGCTAGCAAAGGTAGCCGGTAGCAAACAATCA
GCTTCCATAATCAAGGATGCGATATACATAGTGGGTTCTGGGAGTGGTGA
CTTTCTTCAGAATTACTATGTCAATCCTTTACTTAACAAAGTCTACACTC
CTGAGCAGTATAGCTCAATGCTTGTCAATATTTTCTCAAGTTTTATTAAG
AACATGTATGGATTGGGGGCAAGAAAATTTGGAGTGACTTCACTGCCACC
ATTGGGTTGCCTTCCAGCAGCAAGAACTTTATTTGGATATCACGAGAGCG
GCTGTGTCTCTAGAATCAATACTGATGCTCAACAATTTAACAAGAAGGTC
AGCTCCGCAGCAACAAATCTTCAAAAGCAACTTCCTGATCTGAAAATTGT
GATTTTCGACATTTTCAAGCCAATCTATGACCTTGTCCAGTCCCCTTCAA
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