CX286824

Overview
NameCX286824
Unique NameCX286824
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length544
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286824 vs. ExPASy Swiss-Prot
Match: WDR5_RAT (WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.271e-11
Identity = 44/159 (27.67%), Postives = 84/159 (52.83%), Query Frame = 1
Query:   19 ISDLEVTSDGKQIITMCKESALLLLDREAK--VERYIEEDQTITSF-SLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASAS--DDRTIRIW 480
            +S +    DG  I++   +    + D  +   ++  I++D    SF   S + K++L   L+  + LW+   + K +  Y GHK  ++ I + F      +I SGSED+ VYIW+  + +++  L GH+  V   + +P   +++ASA+  +D+TI++W
Sbjct:  174 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 330          
BLAST of CX286824 vs. ExPASy Swiss-Prot
Match: WDR5_MOUSE (WD repeat-containing protein 5 OS=Mus musculus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.271e-11
Identity = 44/159 (27.67%), Postives = 84/159 (52.83%), Query Frame = 1
Query:   19 ISDLEVTSDGKQIITMCKESALLLLDREAK--VERYIEEDQTITSF-SLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASAS--DDRTIRIW 480
            +S +    DG  I++   +    + D  +   ++  I++D    SF   S + K++L   L+  + LW+   + K +  Y GHK  ++ I + F      +I SGSED+ VYIW+  + +++  L GH+  V   + +P   +++ASA+  +D+TI++W
Sbjct:  174 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 330          
BLAST of CX286824 vs. ExPASy Swiss-Prot
Match: WDR5_HUMAN (WD repeat-containing protein 5 OS=Homo sapiens GN=WDR5 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.271e-11
Identity = 44/159 (27.67%), Postives = 84/159 (52.83%), Query Frame = 1
Query:   19 ISDLEVTSDGKQIITMCKESALLLLDREAK--VERYIEEDQTITSF-SLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASAS--DDRTIRIW 480
            +S +    DG  I++   +    + D  +   ++  I++D    SF   S + K++L   L+  + LW+   + K +  Y GHK  ++ I + F      +I SGSED+ VYIW+  + +++  L GH+  V   + +P   +++ASA+  +D+TI++W
Sbjct:  174 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 330          
BLAST of CX286824 vs. ExPASy Swiss-Prot
Match: WDR5_BOVIN (WD repeat-containing protein 5 OS=Bos taurus GN=WDR5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.271e-11
Identity = 44/159 (27.67%), Postives = 84/159 (52.83%), Query Frame = 1
Query:   19 ISDLEVTSDGKQIITMCKESALLLLDREAK--VERYIEEDQTITSF-SLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASAS--DDRTIRIW 480
            +S +    DG  I++   +    + D  +   ++  I++D    SF   S + K++L   L+  + LW+   + K +  Y GHK  ++ I + F      +I SGSED+ VYIW+  + +++  L GH+  V   + +P   +++ASA+  +D+TI++W
Sbjct:  174 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 330          
BLAST of CX286824 vs. ExPASy Swiss-Prot
Match: WDR5_DICDI (WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.967e-11
Identity = 34/120 (28.33%), Postives = 64/120 (53.33%), Query Frame = 1
Query:  124 EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASD-DRTIRIW 480
            E+ + ++    S + KF+L   L+  + LW+     K +  Y GHK  ++ I S F      +I +GSED+ +YI++  + +++  L GH   V  V+ +P    + + A + DR+++IW
Sbjct:  213 EDGKEVSFVKFSPNGKFVLAGTLDNTLRLWSYNNNKKCLKTYTGHKNEKYCIFSTFSVTCGKWIVTGSEDNLIYIYNLQTREIVQTLAGHEDVVLTVACHPTENIIASGALEKDRSVKIW 332          
BLAST of CX286824 vs. ExPASy Swiss-Prot
Match: TG125_CAEBR (WD repeat-containing protein tag-125 OS=Caenorhabditis briggsae GN=tag-125 PE=4 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.967e-11
Identity = 37/121 (30.58%), Postives = 71/121 (58.68%), Query Frame = 1
Query:  124 EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASAS--DDRTIRIW 480
            +E+  +     S + K++L + L+  + LW+  G+ K + +Y+GH+ +++ I + F      +I SGSED ++Y+W+  + +++ +L GH+ AV     +P   +M+AS +   D TIRIW
Sbjct:  246 DENPPVAFVKFSPNGKYILSSNLDNTLKLWDF-GKGKTLKQYQGHENNKYCIFANFSVTGGKWIISGSEDCKIYVWNLQTKEVVQSLEGHTQAVIASDCHPMQ-NMIASGALEPDNTIRIW 364          
BLAST of CX286824 vs. ExPASy Swiss-Prot
Match: DCAF8_PONAB (DDB1- and CUL4-associated factor 8 OS=Pongo abelii GN=DCAF8 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.967e-11
Identity = 44/143 (30.77%), Postives = 72/143 (50.35%), Query Frame = 1
Query:  124 EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE--VKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPG-HSGAVNCVSWNPANPHMLASASDDRTIRIW-----------GLKDLNVKRK 510
            E    IT    S D   LL +  +++I+L+N       + V +YKGH+ +  V    F G +  F+ SGS+   +++W ++SC +I  + G   G VNC+  +P  P +LA++  D  ++IW           GLKD+  K K
Sbjct:  385 ESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYVKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLP-VLATSGLDHDVKIWAPTAEASTELTGLKDVIKKNK 526          
BLAST of CX286824 vs. ExPASy Swiss-Prot
Match: DCAF8_HUMAN (DDB1- and CUL4-associated factor 8 OS=Homo sapiens GN=DCAF8 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.967e-11
Identity = 44/143 (30.77%), Postives = 72/143 (50.35%), Query Frame = 1
Query:  124 EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE--VKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPG-HSGAVNCVSWNPANPHMLASASDDRTIRIW-----------GLKDLNVKRK 510
            E    IT    S D   LL +  +++I+L+N       + V +YKGH+ +  V    F G +  F+ SGS+   +++W ++SC +I  + G   G VNC+  +P  P +LA++  D  ++IW           GLKD+  K K
Sbjct:  385 ESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYVKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLP-VLATSGLDHDVKIWAPTAEASTELTGLKDVIKKNK 526          
BLAST of CX286824 vs. ExPASy Swiss-Prot
Match: KTNB1_DANRE (Katanin p80 WD40-containing subunit B1 OS=Danio rerio GN=katnb1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.874e-11
Identity = 44/166 (26.51%), Postives = 84/166 (50.60%), Query Frame = 1
Query:   10 TLKISDLEVTSDGKQIITMCKESALLLLDREAK--VERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNV 501
            T  +  ++  S  ++++      +L L D EA   +   +    +I+S       ++L    ++  I LW++  +   V +YKGH ++   +R      +  ++AS S+DS V +W   +  +I     H+ AVN V ++P N ++LAS S DRT+++W L+  N+
Sbjct:   63 TSAVGCIQFNSSEERVVAGSLSGSLRLWDLEAAKILRTLMGHKASISSLDFHPMGEYLASGSVDSNIKLWDVRRK-GCVFRYKGHTQA---VRCLAFSPDGKWLASASDDSTVKLWDLIAGKMITEFTSHTSAVNVVQFHP-NEYLLASGSADRTVKLWDLEKFNM 223          
BLAST of CX286824 vs. ExPASy Swiss-Prot
Match: DCAF8_RAT (DDB1- and CUL4-associated factor 8 OS=Rattus norvegicus GN=Dcaf8 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.874e-11
Identity = 43/143 (30.07%), Postives = 72/143 (50.35%), Query Frame = 1
Query:  124 EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE--VKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPG-HSGAVNCVSWNPANPHMLASASDDRTIRIW-----------GLKDLNVKRK 510
            E    IT    S D   LL +  +++I+L+N       + + +YKGH+ +  V    F G +  F+ SGS+   +++W ++SC +I  + G   G VNC+  +P  P +LA++  D  ++IW           GLKD+  K K
Sbjct:  379 ESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLP-VLATSGLDHDVKIWAPTAEASTELTGLKDVIKKNK 520          
The following BLAST results are available for this feature:
BLAST of CX286824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
WDR5_RAT2.271e-1127.67WD repeat-containing protein 5 OS=Rattus norvegicu... [more]
WDR5_MOUSE2.271e-1127.67WD repeat-containing protein 5 OS=Mus musculus GN=... [more]
WDR5_HUMAN2.271e-1127.67WD repeat-containing protein 5 OS=Homo sapiens GN=... [more]
WDR5_BOVIN2.271e-1127.67WD repeat-containing protein 5 OS=Bos taurus GN=WD... [more]
WDR5_DICDI2.967e-1128.33WD repeat-containing protein 5 homolog OS=Dictyost... [more]
TG125_CAEBR2.967e-1130.58WD repeat-containing protein tag-125 OS=Caenorhabd... [more]
DCAF8_PONAB2.967e-1130.77DDB1- and CUL4-associated factor 8 OS=Pongo abelii... [more]
DCAF8_HUMAN2.967e-1130.77DDB1- and CUL4-associated factor 8 OS=Homo sapiens... [more]
KTNB1_DANRE3.874e-1126.51Katanin p80 WD40-containing subunit B1 OS=Danio re... [more]
DCAF8_RAT3.874e-1130.07DDB1- and CUL4-associated factor 8 OS=Rattus norve... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01001E01Rv Veg1 Citrus clementina cDNA clone C01001E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286824 ID=CX286824; Name=CX286824; organism=Citrus clementina; type=EST; length=544bp
GGCCAACGAACTTTAAAGATTTCTGATTTGGAAGTAACGAGTGATGGGAA
GCAGATTATAACTATGTGTAAAGAATCTGCCCTACTATTATTGGACAGAG
AAGCAAAAGTTGAGAGGTACATTGAAGAGGATCAAACAATAACATCATTC
TCATTATCTAGAGACAACAAATTCTTGCTGGTGAATCTTCTGAACCAAGA
AATCCATCTTTGGAACATAGAGGGTGAAGTCAAGCTGGTTGCCAAGTACA
AAGGTCATAAACGTAGTCGTTTTGTTATTAGGTCTTGTTTTGGTGGGCTT
GAGCAAGCTTTTATTGCCAGTGGGAGTGAGGATTCACAGGTTTATATATG
GCATAGAGCCTCATGTGACCTCATTGGGGCATTACCGGGTCATTCTGGAG
CTGTTAACTGTGTGAGCTGGAATCCAGCAAATCCTCACATGTTGGCATCA
GCCAGTGATGACCGTACTATTCGGATATGGGGCTTGAAAGATCTAAATGT
GAAGCGGAAGGATTGTCACAGCAATGGCGTCCACTATTGCAATG
back to top