CX286830

Overview
NameCX286830
Unique NameCX286830
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length477
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13469 contig Ccv1_Contig13469:67..543. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX286830 vs. ExPASy Swiss-Prot
Match: H32_BOVIN (Histone H3.2 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 239.58 bits (610), Expect = 5.410e-63
Identity = 121/126 (96.03%), Postives = 124/126 (98.41%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CX286830 vs. ExPASy Swiss-Prot
Match: H32_TOBAC (Histone H3.2 OS=Nicotiana tabacum GN=B34 PE=1 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 7.066e-63
Identity = 122/126 (96.83%), Postives = 123/126 (97.62%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CX286830 vs. ExPASy Swiss-Prot
Match: H32_PETCR (Histone H3.2 OS=Petroselinum crispum GN=H3-7 PE=3 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 7.066e-63
Identity = 122/126 (96.83%), Postives = 123/126 (97.62%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CX286830 vs. ExPASy Swiss-Prot
Match: H32_ORYSJ (Histone H3.2 OS=Oryza sativa subsp. japonica GN=Os01g0866200 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 7.066e-63
Identity = 122/126 (96.83%), Postives = 123/126 (97.62%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CX286830 vs. ExPASy Swiss-Prot
Match: H32_ORYSI (Histone H3.2 OS=Oryza sativa subsp. indica GN=OsI_019426 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 7.066e-63
Identity = 122/126 (96.83%), Postives = 123/126 (97.62%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CX286830 vs. ExPASy Swiss-Prot
Match: H32_MAIZE (Histone H3.2 OS=Zea mays GN=H3C2 PE=1 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 7.066e-63
Identity = 122/126 (96.83%), Postives = 123/126 (97.62%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CX286830 vs. ExPASy Swiss-Prot
Match: H32_EUPES (Histone H3.2 OS=Euphorbia esula GN=H3 PE=2 SV=3)

HSP 1 Score: 239.195 bits (609), Expect = 7.066e-63
Identity = 122/126 (96.83%), Postives = 123/126 (97.62%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CX286830 vs. ExPASy Swiss-Prot
Match: H32_BRANA (Histone H3.2 OS=Brassica napus PE=2 SV=3)

HSP 1 Score: 239.195 bits (609), Expect = 7.066e-63
Identity = 122/126 (96.83%), Postives = 123/126 (97.62%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CX286830 vs. ExPASy Swiss-Prot
Match: H32_ASPOF (Histone H3.2 OS=Asparagus officinalis PE=2 SV=3)

HSP 1 Score: 239.195 bits (609), Expect = 7.066e-63
Identity = 122/126 (96.83%), Postives = 123/126 (97.62%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CX286830 vs. ExPASy Swiss-Prot
Match: H32_ARATH (Histone H3.2 OS=Arabidopsis thaliana GN=HTR2 PE=1 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 7.066e-63
Identity = 122/126 (96.83%), Postives = 123/126 (97.62%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
The following BLAST results are available for this feature:
BLAST of CX286830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H32_BOVIN5.410e-6396.03Histone H3.2 OS=Bos taurus PE=1 SV=2[more]
H32_TOBAC7.066e-6396.83Histone H3.2 OS=Nicotiana tabacum GN=B34 PE=1 SV=1[more]
H32_PETCR7.066e-6396.83Histone H3.2 OS=Petroselinum crispum GN=H3-7 PE=3 ... [more]
H32_ORYSJ7.066e-6396.83Histone H3.2 OS=Oryza sativa subsp. japonica GN=Os... [more]
H32_ORYSI7.066e-6396.83Histone H3.2 OS=Oryza sativa subsp. indica GN=OsI_... [more]
H32_MAIZE7.066e-6396.83Histone H3.2 OS=Zea mays GN=H3C2 PE=1 SV=2[more]
H32_EUPES7.066e-6396.83Histone H3.2 OS=Euphorbia esula GN=H3 PE=2 SV=3[more]
H32_BRANA7.066e-6396.83Histone H3.2 OS=Brassica napus PE=2 SV=3[more]
H32_ASPOF7.066e-6396.83Histone H3.2 OS=Asparagus officinalis PE=2 SV=3[more]
H32_ARATH7.066e-6396.83Histone H3.2 OS=Arabidopsis thaliana GN=HTR2 PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionC01001E07Rv Veg1 Citrus clementina cDNA clone C01001E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286830 ID=CX286830; Name=CX286830; organism=Citrus clementina; type=EST; length=477bp
GAGAAATTGAGTGGAAGAGTTGAAGAAACTCAGAGATGGCCCGTACCAAG
CAAACTGCGCGTAAGTCAACCGGAGGAAAGGCTCCTAGGAAGCAACTTGC
TACCAAGGCCGCCCGTAAGTCTGCGCCCACCACCGGTGGTGTTAAGAAGC
CTCATCGTTACCGTCCTGGAACCGTCGCCCTTCGAGAAATTCGCAAGTAC
CAGAAGAGTACCGAGCTGCTTATCAGGAAACTCCCATTCCAGAGACTTGT
TCGTGAAATTGCTCAGGACTTTAAGACTGATCTGCGTTTCCAGAGCCATG
CAGTACTGGCCCTGCAGGAGGCAGCGGAGGCTTACCTTGTTGGTCTCTTC
GAGGACACTAACCTCTGCGCCATTCATGCAAAGCGTGTCACTATTATGCC
CAAGGACATACAGCTTGCCCGTAGGATCCGTGGCGAGCGTGCTTAAGCGT
AATTGCTGCTTGCTTCAATTGAATGAC
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