CX286830

Overview
NameCX286830
Unique NameCX286830
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length477
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13469 contig Ccv1_Contig13469:67..543. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX286830 vs. ExPASy Swiss-Prot
Match: H331_CAEEL (Histone H3.3 type 1 OS=Caenorhabditis elegans GN=his-71 PE=2 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 1.205e-62
Identity = 121/126 (96.03%), Postives = 124/126 (98.41%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CX286830 vs. ExPASy Swiss-Prot
Match: H3_STRDR (Histone H3, embryonic OS=Strongylocentrotus droebachiensis PE=2 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 1.574e-62
Identity = 120/126 (95.24%), Postives = 124/126 (98.41%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CX286830 vs. ExPASy Swiss-Prot
Match: H3_SOLST (Histone H3, embryonic OS=Solaster stimpsoni PE=2 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 1.574e-62
Identity = 120/126 (95.24%), Postives = 124/126 (98.41%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CX286830 vs. ExPASy Swiss-Prot
Match: H3_PYCHE (Histone H3, embryonic OS=Pycnopodia helianthoides PE=2 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 1.574e-62
Identity = 120/126 (95.24%), Postives = 124/126 (98.41%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CX286830 vs. ExPASy Swiss-Prot
Match: H3_PSAMI (Histone H3, embryonic OS=Psammechinus miliaris PE=2 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 1.574e-62
Identity = 120/126 (95.24%), Postives = 124/126 (98.41%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CX286830 vs. ExPASy Swiss-Prot
Match: H3_PISOC (Histone H3, embryonic OS=Pisaster ochraceus PE=2 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 1.574e-62
Identity = 120/126 (95.24%), Postives = 124/126 (98.41%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CX286830 vs. ExPASy Swiss-Prot
Match: H3_PISBR (Histone H3, embryonic OS=Pisaster brevispinus PE=2 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 1.574e-62
Identity = 120/126 (95.24%), Postives = 124/126 (98.41%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CX286830 vs. ExPASy Swiss-Prot
Match: H3_PARLI (Histone H3, embryonic OS=Paracentrotus lividus PE=2 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 1.574e-62
Identity = 120/126 (95.24%), Postives = 124/126 (98.41%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CX286830 vs. ExPASy Swiss-Prot
Match: H3_LYTPI (Histone H3, embryonic OS=Lytechinus pictus PE=2 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 1.574e-62
Identity = 120/126 (95.24%), Postives = 124/126 (98.41%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CX286830 vs. ExPASy Swiss-Prot
Match: H3_DERIM (Histone H3, embryonic OS=Dermasterias imbricata PE=2 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 1.574e-62
Identity = 120/126 (95.24%), Postives = 124/126 (98.41%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
The following BLAST results are available for this feature:
BLAST of CX286830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H331_CAEEL1.205e-6296.03Histone H3.3 type 1 OS=Caenorhabditis elegans GN=h... [more]
H3_STRDR1.574e-6295.24Histone H3, embryonic OS=Strongylocentrotus droeba... [more]
H3_SOLST1.574e-6295.24Histone H3, embryonic OS=Solaster stimpsoni PE=2 S... [more]
H3_PYCHE1.574e-6295.24Histone H3, embryonic OS=Pycnopodia helianthoides ... [more]
H3_PSAMI1.574e-6295.24Histone H3, embryonic OS=Psammechinus miliaris PE=... [more]
H3_PISOC1.574e-6295.24Histone H3, embryonic OS=Pisaster ochraceus PE=2 S... [more]
H3_PISBR1.574e-6295.24Histone H3, embryonic OS=Pisaster brevispinus PE=2... [more]
H3_PARLI1.574e-6295.24Histone H3, embryonic OS=Paracentrotus lividus PE=... [more]
H3_LYTPI1.574e-6295.24Histone H3, embryonic OS=Lytechinus pictus PE=2 SV... [more]
H3_DERIM1.574e-6295.24Histone H3, embryonic OS=Dermasterias imbricata PE... [more]

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Properties
Property NameValue
Genbank descriptionC01001E07Rv Veg1 Citrus clementina cDNA clone C01001E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286830 ID=CX286830; Name=CX286830; organism=Citrus clementina; type=EST; length=477bp
GAGAAATTGAGTGGAAGAGTTGAAGAAACTCAGAGATGGCCCGTACCAAG
CAAACTGCGCGTAAGTCAACCGGAGGAAAGGCTCCTAGGAAGCAACTTGC
TACCAAGGCCGCCCGTAAGTCTGCGCCCACCACCGGTGGTGTTAAGAAGC
CTCATCGTTACCGTCCTGGAACCGTCGCCCTTCGAGAAATTCGCAAGTAC
CAGAAGAGTACCGAGCTGCTTATCAGGAAACTCCCATTCCAGAGACTTGT
TCGTGAAATTGCTCAGGACTTTAAGACTGATCTGCGTTTCCAGAGCCATG
CAGTACTGGCCCTGCAGGAGGCAGCGGAGGCTTACCTTGTTGGTCTCTTC
GAGGACACTAACCTCTGCGCCATTCATGCAAAGCGTGTCACTATTATGCC
CAAGGACATACAGCTTGCCCGTAGGATCCGTGGCGAGCGTGCTTAAGCGT
AATTGCTGCTTGCTTCAATTGAATGAC
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