CX286833

Overview
NameCX286833
Unique NameCX286833
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length536
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H3_MASBA (Histone H3 OS=Mastigamoeba balamuthi PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 3.156e-58
Identity = 115/126 (91.27%), Postives = 120/126 (95.24%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRK +ATKA RK+AP  GGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKAVATKA-RKTAPPVGGVKKPHRFRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 125
[Close]
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H33_LODEL (Histone H3.3 OS=Lodderomyces elongisporus GN=HHT3 PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 3.156e-58
Identity = 113/126 (89.68%), Postives = 120/126 (95.24%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP +GGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFK+DLRFQS A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI  KDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPVSGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDIQ 126
[Close]
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H31_PICST (Histone H3.1/H3.2 OS=Pichia stipitis GN=HHT1 PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 3.156e-58
Identity = 113/126 (89.68%), Postives = 120/126 (95.24%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQKKDIQ 126
[Close]
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H31_PICGU (Histone H3.1/H3.2 OS=Pichia guilliermondii GN=HHT1 PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 3.156e-58
Identity = 113/126 (89.68%), Postives = 120/126 (95.24%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQKKDIQ 126
[Close]
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H31_DEBHA (Histone H3.1/H3.2 OS=Debaryomyces hansenii GN=HHT1 PE=3 SV=3)

HSP 1 Score: 224.172 bits (570), Expect = 3.156e-58
Identity = 113/126 (89.68%), Postives = 120/126 (95.24%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQKKDIQ 126
[Close]
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H33_SCHPO (Histone H3.3 OS=Schizosaccharomyces pombe GN=hht3 PE=1 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 4.122e-58
Identity = 113/126 (89.68%), Postives = 118/126 (93.65%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP TGGVKKPHRYRP TVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA EAYLV LFEDTNLCAIH KRVTI PKD+Q
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPPTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQ 126
[Close]
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H33_PICGU (Histone H3.3 OS=Pichia guilliermondii GN=HHT3 PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 5.384e-58
Identity = 113/126 (89.68%), Postives = 119/126 (94.44%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP TGGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFK+DLRFQS A+ ALQEA EAYLV LFEDTNLCAIHAKRVTI  KDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPVTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHAKRVTIQKKDIQ 126
[Close]
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H3_TRIRE (Histone H3 OS=Trichoderma reesei GN=HHT1 PE=3 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 7.032e-58
Identity = 112/126 (88.89%), Postives = 120/126 (95.24%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRFQS A+ ALQE+ E+YLV LFEDTNLCAIHAKRVTI  KDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVESYLVSLFEDTNLCAIHAKRVTIQSKDIQ 126
[Close]
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H3_PENFN (Histone H3 OS=Penicillium funiculosum GN=HHT1 PE=3 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 7.032e-58
Identity = 112/126 (88.89%), Postives = 120/126 (95.24%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRFQS A+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQ 126
[Close]
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H3_NEUCR (Histone H3 OS=Neurospora crassa GN=hh3 PE=1 SV=3)

HSP 1 Score: 223.016 bits (567), Expect = 7.032e-58
Identity = 112/126 (88.89%), Postives = 120/126 (95.24%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRFQS A+ ALQE+ E+YLV LFEDTNLCAIHAKRVTI  KDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVESYLVSLFEDTNLCAIHAKRVTIQSKDIQ 126
The following BLAST results are available for this feature:
BLAST of CX286833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H3_MASBA3.156e-5891.27Histone H3 OS=Mastigamoeba balamuthi PE=2 SV=1[more]
H33_LODEL3.156e-5889.68Histone H3.3 OS=Lodderomyces elongisporus GN=HHT3 ... [more]
H31_PICST3.156e-5889.68Histone H3.1/H3.2 OS=Pichia stipitis GN=HHT1 PE=3 ... [more]
H31_PICGU3.156e-5889.68Histone H3.1/H3.2 OS=Pichia guilliermondii GN=HHT1... [more]
H31_DEBHA3.156e-5889.68Histone H3.1/H3.2 OS=Debaryomyces hansenii GN=HHT1... [more]
H33_SCHPO4.122e-5889.68Histone H3.3 OS=Schizosaccharomyces pombe GN=hht3 ... [more]
H33_PICGU5.384e-5889.68Histone H3.3 OS=Pichia guilliermondii GN=HHT3 PE=3... [more]
H3_TRIRE7.032e-5888.89Histone H3 OS=Trichoderma reesei GN=HHT1 PE=3 SV=2[more]
H3_PENFN7.032e-5888.89Histone H3 OS=Penicillium funiculosum GN=HHT1 PE=3... [more]
H3_NEUCR7.032e-5888.89Histone H3 OS=Neurospora crassa GN=hh3 PE=1 SV=3[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01001E10Rv Veg1 Citrus clementina cDNA clone C01001E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286833 ID=CX286833; Name=CX286833; organism=Citrus clementina; type=EST; length=536bp
GAGAAATTGAGTGGAAGAGTTGAAGAAACTCAGAGATGGCCCGTACCAAG
CAAACTGCGCGTAAGTCAACCGGAGGAAAGGCTCCTAGGAAGCAACTTGC
TACCAAGGCCGCCCGTAAGTCTGCGCCCACCACCGGTGGTGTTAAGAAGC
CTCATCGTTACCGTCCTGGAACCGTCGCCCTTCGAGAAATTCGCAAGTAC
CAGAAGAGTACCGAGCTGCTTATCAGGAAACTCCCATTCCAGAGACTTGT
TCGTGAAATTGCTCAGGACTTTAAGACTGATCTGCGTTTCCAGAGCCATG
CAGTACTGGCCCTGCAGGAGGCAGCGGAGGCTTACCTTGTTGGTCTCTTC
GAGGACACTAACCTCTGCGCCATTCATGCAAAGCGTGTCACTATTATGCC
CAAGGACATACAGCTTGCCCGTAGGATCCGTGGCGAGCGTGCTTAAGCGT
AATTGCTGCTTGCTTCAATTGAATGACTGGAAGGGAAGGGGGAAGTTGTA
ATGTGTTAATTTGTACGTGGGGGTTGGTGGGGGTAG
back to top