CX286843

Overview
NameCX286843
Unique NameCX286843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length464
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX286843 vs. ExPASy Swiss-Prot
Match: SPK1_CAEEL (Serine/threonine-protein kinase spk-1 OS=Caenorhabditis elegans GN=spk-1 PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 1.422e-17
Identity = 42/93 (45.16%), Postives = 63/93 (67.74%), Query Frame = 2 
Query:    2 KDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 280
            +DEDHLA + ELLG +P  I   G++ R+FF+++G L HI +L+ W + +VL +KY+++  DA+    FL P+LDF  EKR TA   L HP++
Sbjct:  812 RDEDHLAHISELLGAIPPSIYKKGKHWREFFHKNGHLLHIHQLKPWSLYEVLRQKYEWSHEDAQQFESFLRPMLDFDQEKRSTAKIALKHPFL 904
[Close]
BLAST of CX286843 vs. ExPASy Swiss-Prot
Match: SPK1_CAEBR (Serine/threonine-protein kinase spk-1 OS=Caenorhabditis briggsae GN=spk-1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.167e-17
Identity = 44/106 (41.51%), Postives = 67/106 (63.21%), Query Frame = 2 
Query:    2 KDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM--SAGPQLREPSM 313
            +DEDHLA + ELLG +   I   G++ R+FF+++G+L HI  L+ W + +VL +KY+++  DA+    FL P+LDF  EKR TA   L HP++    G   R+P +
Sbjct:  591 RDEDHLAHISELLGQISPSIYKKGKHWREFFHKNGNLLHIHNLKPWSLYEVLRQKYEWSHEDAQQFESFLRPMLDFDQEKRATANDALKHPFLLPFGGKAPRDPEV 696
The following BLAST results are available for this feature:
BLAST of CX286843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
SPK1_CAEEL1.422e-1745.16Serine/threonine-protein kinase spk-1 OS=Caenorhab... [more]
SPK1_CAEBR3.167e-1741.51Serine/threonine-protein kinase spk-1 OS=Caenorhab... [more]

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Properties
Property NameValue
Genbank descriptionC01001F09Rv Veg1 Citrus clementina cDNA clone C01001F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286843 ID=CX286843; Name=CX286843; organism=Citrus clementina; type=EST; length=464bp
TAAGGATGAGGATCACTTGGCACTGATGATGGAGCTTCTCGGGATGATGC
CACGCAAGATTGCATTGGGTGGTCGCTATTCCCGTGATTTCTTCAACAGA
CATGGGGATTTGAGGCACATCCGTCGTCTACGTTTTTGGCCTATGAATAA
GGTCCTTGTAGAGAAGTACGACTTTAACGAGCGAGATGCAAAGGACATGG
CTGACTTCCTTGTTCCAATACTTGATTTCGTTCCTGAAAAGAGACCAACT
GCAGCCCAATGTCTCAGTCATCCATGGATGAGTGCAGGACCTCAACTGCG
TGAGCCTTCTATGGCTGCTGGTGAGCCACGGGAGACAGAAGGTAGTATAC
CTGAAAGAAAGAGGAGGGAGCATGAGGAGAGGGAGGCTATGGAAGTGGGA
GTGGGGAATATGGCCATTAATGGGGCTTCAAAGTTATCAAGCGACCAGGA
AGCTGCTGCATTAA
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