CX286850

Overview
NameCX286850
Unique NameCX286850
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length466
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX286850 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.523e-11
Identity = 29/85 (34.12%), Postives = 47/85 (55.29%), Query Frame = 1 
Query:  208 NRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVP 462
            ++LF R + +H +LGGG  ADV+LWR K +S  ++    A W++FE   Y   T++   L+L +   F W   + + NR    +P
Sbjct:    6 DKLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLP 90
The following BLAST results are available for this feature:
BLAST of CX286850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RTNLL_ARATH4.523e-1134.12Reticulon-like protein B12 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC01001G05Rv Veg1 Citrus clementina cDNA clone C01001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286850 ID=CX286850; Name=CX286850; organism=Citrus clementina; type=EST; length=466bp
AAAATCTTCACGGCCACAACTCCAATCATCTACTCAACAGACCCCATTTT
TTTCCTTTTTTCTTGAAAGATTGGAAGAATGCCAGAGAAAATAACAGCAG
AGAACATTTTGGACAACCTTGTGGAAACCATTTCAGATAAGGTTCAAAAG
CAGAAAGCTGTATCATTTTTTGAGGAAGAGACATCAAGCTCAGTCACTGC
TCGTTTCAATCGGCTGTTCGGACGCCAGAAACCTGTCCACCATCTTTTGG
GCGGTGGAAAATCTGCTGATGTTTTGTTATGGAGGAACAAGAAGATATCA
GCCAGTGTATTAATGGGTGCAACAGCAATTTGGGTGCTCTTTGAATGGCT
TAACTACCATTTTCTGACCATTGTATGCTTTGCTTTGGTCCTTGGCATGC
TTGCTCAATTTTTTTGGGTAAACATTTCGGGCTTATTTAACAGATCACCA
TCAAAAGTTCCCCGCT
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