CX286853

Overview
NameCX286853
Unique NameCX286853
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length621
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_EUGGR (ATP synthase subunit c, chloroplastic OS=Euglena gracilis GN=atpH PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.202e-22
Identity = 56/81 (69.14%), Postives = 62/81 (76.54%), Query Frame = 2
Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNP+I AASVI AGLA+GL +I                +ARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALA++FANPFV
Sbjct:    1 MNPIICAASVIGAGLAIGLGAIGPGIGQGTASGKAIEGLARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALAIIFANPFV 81          
BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_CHLVU (ATP synthase subunit c, chloroplastic OS=Chlorella vulgaris GN=atpH PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.202e-22
Identity = 57/80 (71.25%), Postives = 62/80 (77.50%), Query Frame = 2
Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 271
            MNP+++AASVIAAGLAVGLA+I                IARQPEAEGKIRG LLLS AFME+LTIYGLVVALALLFANPF
Sbjct:    1 MNPIVAAASVIAAGLAVGLAAIGPGMGQGTAAGYAVEGIARQPEAEGKIRGALLLSFAFMESLTIYGLVVALALLFANPF 80          
BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_OLTVI (ATP synthase subunit c, chloroplastic OS=Oltmannsiellopsis viridis GN=atpH PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.875e-22
Identity = 57/80 (71.25%), Postives = 62/80 (77.50%), Query Frame = 2
Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 271
            MNPLI+AASV+AAGL+VGLA+I                IARQPEAEGKIRG LLLS AFME+LTIYGLVVALALLFANPF
Sbjct:    1 MNPLIAAASVVAAGLSVGLAAIGPGMGQGTAAGYAVEGIARQPEAEGKIRGALLLSFAFMESLTIYGLVVALALLFANPF 80          
BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_STIHE (ATP synthase subunit c, chloroplastic OS=Stigeoclonium helveticum GN=atpH PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.755e-22
Identity = 57/80 (71.25%), Postives = 62/80 (77.50%), Query Frame = 2
Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 271
            MNP+I+AASVIAAGL+VGLA+I                IARQPEAEGKIRG LLLS AFME+LTIYGLVVALALLFANPF
Sbjct:    1 MNPIIAAASVIAAGLSVGLAAIGPGMGQGTAAGYAVEGIARQPEAEGKIRGALLLSFAFMESLTIYGLVVALALLFANPF 80          
BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_BIGNA (ATP synthase subunit c, chloroplastic OS=Bigelowiella natans GN=atpH PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.905e-22
Identity = 56/80 (70.00%), Postives = 61/80 (76.25%), Query Frame = 2
Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 271
            MNPLISA+SV+AAGLA+GLA+I                IARQPEAEGKIRG LLLS AFME+LTIYGLVVAL LLFANPF
Sbjct:    1 MNPLISASSVVAAGLAIGLAAIGPGIGQGTAAGYAVEGIARQPEAEGKIRGALLLSFAFMESLTIYGLVVALVLLFANPF 80          
BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPL_THEEB (ATP synthase subunit c OS=Thermosynechococcus elongatus (strain BP-1) GN=atpE PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 6.405e-22
Identity = 55/80 (68.75%), Postives = 62/80 (77.50%), Query Frame = 2
Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 271
            MNPLI++ASV+AA LA+GLAS+                IARQPEAEGKIRGTLLLSLAFME+LTIYGLV+AL LLFANPF
Sbjct:    1 MNPLIASASVLAAALAIGLASLGPGLAQGNASGQALEGIARQPEAEGKIRGTLLLSLAFMESLTIYGLVIALVLLFANPF 80          
BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_THAPS (ATP synthase subunit c, chloroplastic OS=Thalassiosira pseudonana GN=atpH PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.405e-22
Identity = 58/80 (72.50%), Postives = 62/80 (77.50%), Query Frame = 2
Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 271
            M+ +ISAASVIAAGLA+GLA+I                IARQPEAE KIRGTLLLSLAFMEALTIYGLVVALALLFANPF
Sbjct:    1 MDSIISAASVIAAGLAIGLAAIGPGIGQGNAAGQAVEGIARQPEAENKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 80          
BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_SCEOB (ATP synthase subunit c, chloroplastic OS=Scenedesmus obliquus GN=atpH PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.405e-22
Identity = 55/80 (68.75%), Postives = 62/80 (77.50%), Query Frame = 2
Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 271
            MNP+++AASV++AGLAVGLA+I                IARQPEAEGKIRG LLLS AFME+LTIYGLVVALALLFANPF
Sbjct:    1 MNPIVAAASVVSAGLAVGLAAIGPGMGQGTAAGYAVEGIARQPEAEGKIRGALLLSFAFMESLTIYGLVVALALLFANPF 80          
BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPL_CYAP8 (ATP synthase subunit c OS=Cyanothece sp. (strain PCC 8801) GN=atpE PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.366e-22
Identity = 56/80 (70.00%), Postives = 61/80 (76.25%), Query Frame = 2
Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 271
            MNP ++AASVIAA LAVGLA+I                IARQPEAEGKIRGTLLLSLAFME+LTIYGLV+AL LLFANPF
Sbjct:    1 MNPTVAAASVIAAALAVGLAAIGPGFGQGNASGEAVSGIARQPEAEGKIRGTLLLSLAFMESLTIYGLVIALVLLFANPF 80          
BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_PORYE (ATP synthase subunit c, chloroplastic OS=Porphyra yezoensis GN=atpH PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.427e-21
Identity = 56/81 (69.14%), Postives = 63/81 (77.78%), Query Frame = 2
Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            M+ ++SAASVIAAGLAVGLA+I                IARQPE EGKIRGTLLLSLAFME+LTIYGLVVAL+LLFANP+V
Sbjct:    1 MDSIVSAASVIAAGLAVGLAAIGPGIGQGSAAANAVEGIARQPEVEGKIRGTLLLSLAFMESLTIYGLVVALSLLFANPYV 81          
The following BLAST results are available for this feature:
BLAST of CX286853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
ATPH_EUGGR2.202e-2269.14ATP synthase subunit c, chloroplastic OS=Euglena g... [more]
ATPH_CHLVU2.202e-2271.25ATP synthase subunit c, chloroplastic OS=Chlorella... [more]
ATPH_OLTVI2.875e-2271.25ATP synthase subunit c, chloroplastic OS=Oltmannsi... [more]
ATPH_STIHE3.755e-2271.25ATP synthase subunit c, chloroplastic OS=Stigeoclo... [more]
ATPH_BIGNA4.905e-2270.00ATP synthase subunit c, chloroplastic OS=Bigelowie... [more]
ATPL_THEEB6.405e-2268.75ATP synthase subunit c OS=Thermosynechococcus elon... [more]
ATPH_THAPS6.405e-2272.50ATP synthase subunit c, chloroplastic OS=Thalassio... [more]
ATPH_SCEOB6.405e-2268.75ATP synthase subunit c, chloroplastic OS=Scenedesm... [more]
ATPL_CYAP88.366e-2270.00ATP synthase subunit c OS=Cyanothece sp. (strain P... [more]
ATPH_PORYE1.427e-2169.14ATP synthase subunit c, chloroplastic OS=Porphyra ... [more]

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Properties
Property NameValue
Genbank descriptionC01001G08Rv Veg1 Citrus clementina cDNA clone C01001G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286853 ID=CX286853; Name=CX286853; organism=Citrus clementina; type=EST; length=621bp
TTTTTCTTTATTTTAGTGCGAGGGACTTATCATGAATCCACTGATTTCTG
CCGCTTCCGTTATTGCTGCTGGGTTGGCTGTTGGGCTTGCTTCTATTGGA
CCTGGAGTTGGTCAAGGTACTGCTGCGGGCCAGGCAGTAGAAGGGATCGC
GAGACAGCCCGAGGCGGAGGGAAAAATACGAGGTACTTTATTGCTTAGTC
TGGCTTTTATGGAAGCTTTAACAATTTATGGGCTGGTTGTAGCATTAGCA
CTTTTATTTGCGAATCCTTTTGTTTAATCCTAGAAATAGGAAGGGCAATT
TACAATTTACTTATTTTTTTTTCTCTTATTTATTATATCTGTGTTTCTGG
CTTTTTTGAATTCTATCAAGATTTAACTCCTCCAATTGGAAGGACTGATT
TGAGGATGGGGAATTAGGATAGGCATACCAGTTCGCCTTTTTCTTTCCCT
TTCTTAGTCTAAAGGAAACCCTCTTTTTAAGTGATGCTGCAACAAACGAG
GGGTTTTGCAATTGACAGGAGTCCCGGCCCCTAATACTAATAAGTATCCC
TCTTATCGGGAATCCCCAATTGCCAATTCAAAGAAAGGATTTCGAAATCG
AATTTTTGACCCTGTTTCGAA
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