CX286853

Overview
NameCX286853
Unique NameCX286853
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length621
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPL_SYNY3 (ATP synthase subunit c OS=Synechocystis sp. (strain PCC 6803) GN=atpE PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.744e-19
Identity = 52/80 (65.00%), Postives = 59/80 (73.75%), Query Frame = 2 
Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 271
            M+  ++AASVIAA LAVGL +I                IARQPEAEGKIRGTLLL+LAFME+LTIYGLV+AL LLFANPF
Sbjct:    1 MDSTVAAASVIAAALAVGLGAIGPGIGQGNASGQAVSGIARQPEAEGKIRGTLLLTLAFMESLTIYGLVIALVLLFANPF 80
[Close]
BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPL_SYNJB (ATP synthase subunit c OS=Synechococcus sp. GN=atpE PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.886e-19
Identity = 51/80 (63.75%), Postives = 58/80 (72.50%), Query Frame = 2 
Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 271
            M+PL SAASV++A LA+GL S+                +ARQPEAE KIRG LL+SLAFMEALTIYGLVVAL LLFANPF
Sbjct:    1 MDPLTSAASVLSAALAIGLGSLGPGLGQGNAAAAAMEGLARQPEAEDKIRGNLLVSLAFMEALTIYGLVVALVLLFANPF 80
[Close]
BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPL_SYNJA (ATP synthase subunit c OS=Synechococcus sp. (strain JA-3-3Ab) GN=atpE PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.886e-19
Identity = 51/80 (63.75%), Postives = 58/80 (72.50%), Query Frame = 2 
Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 271
            M+PL SAASV++A LA+GL S+                +ARQPEAE KIRG LL+SLAFMEALTIYGLVVAL LLFANPF
Sbjct:    1 MDPLTSAASVLSAALAIGLGSLGPGLGQGNAAAAAMEGLARQPEAEDKIRGNLLVSLAFMEALTIYGLVVALVLLFANPF 80
The following BLAST results are available for this feature:
BLAST of CX286853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
ATPL_SYNY31.744e-1965.00ATP synthase subunit c OS=Synechocystis sp. (strai... [more]
ATPL_SYNJB3.886e-1963.75ATP synthase subunit c OS=Synechococcus sp. GN=atp... [more]
ATPL_SYNJA3.886e-1963.75ATP synthase subunit c OS=Synechococcus sp. (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01001G08Rv Veg1 Citrus clementina cDNA clone C01001G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286853 ID=CX286853; Name=CX286853; organism=Citrus clementina; type=EST; length=621bp
TTTTTCTTTATTTTAGTGCGAGGGACTTATCATGAATCCACTGATTTCTG
CCGCTTCCGTTATTGCTGCTGGGTTGGCTGTTGGGCTTGCTTCTATTGGA
CCTGGAGTTGGTCAAGGTACTGCTGCGGGCCAGGCAGTAGAAGGGATCGC
GAGACAGCCCGAGGCGGAGGGAAAAATACGAGGTACTTTATTGCTTAGTC
TGGCTTTTATGGAAGCTTTAACAATTTATGGGCTGGTTGTAGCATTAGCA
CTTTTATTTGCGAATCCTTTTGTTTAATCCTAGAAATAGGAAGGGCAATT
TACAATTTACTTATTTTTTTTTCTCTTATTTATTATATCTGTGTTTCTGG
CTTTTTTGAATTCTATCAAGATTTAACTCCTCCAATTGGAAGGACTGATT
TGAGGATGGGGAATTAGGATAGGCATACCAGTTCGCCTTTTTCTTTCCCT
TTCTTAGTCTAAAGGAAACCCTCTTTTTAAGTGATGCTGCAACAAACGAG
GGGTTTTGCAATTGACAGGAGTCCCGGCCCCTAATACTAATAAGTATCCC
TCTTATCGGGAATCCCCAATTGCCAATTCAAAGAAAGGATTTCGAAATCG
AATTTTTGACCCTGTTTCGAA
back to top