CX286856

Overview
NameCX286856
Unique NameCX286856
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length304
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4 contig Ccv1_Contig4:1..304. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286856 vs. ExPASy Swiss-Prot
Match: APEB_PSEAB (Probable M18 family aminopeptidase 2 OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=apeB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.034e-20
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 2
Query:   17 NGFHVVGAHTDSPCLKLKPVSKVTKGGYLEVGVQTYGGGLWHTWFDRDLTVAGRVIIREGKDGSGPYSHKLVRIDEPIMRIPTLAIHLDRNVN 295
            +GF +VGAHTDSPCL++KP  ++ + G+L++GV+ YGG L+  WFDRDL++AGRV  R     +G    +LV   + I  IP LAIHL+R  N
Sbjct:   74 SGFRLVGAHTDSPCLRVKPNPEIARNGFLQLGVEVYGGALFAPWFDRDLSLAGRVTFR----ANGKLESRLVDFRKAIAVIPNLAIHLNRAAN 162          
BLAST of CX286856 vs. ExPASy Swiss-Prot
Match: APEB_PSEA8 (Probable M18 family aminopeptidase 2 OS=Pseudomonas aeruginosa (strain LESB58) GN=apeB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.034e-20
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 2
Query:   17 NGFHVVGAHTDSPCLKLKPVSKVTKGGYLEVGVQTYGGGLWHTWFDRDLTVAGRVIIREGKDGSGPYSHKLVRIDEPIMRIPTLAIHLDRNVN 295
            +GF +VGAHTDSPCL++KP  ++ + G+L++GV+ YGG L+  WFDRDL++AGRV  R     +G    +LV   + I  IP LAIHL+R  N
Sbjct:   74 SGFRLVGAHTDSPCLRVKPNPEIARNGFLQLGVEVYGGALFAPWFDRDLSLAGRVTFR----ANGKLESRLVDFRKAIAVIPNLAIHLNRAAN 162          
BLAST of CX286856 vs. ExPASy Swiss-Prot
Match: APEB_PSEA7 (Probable M18 family aminopeptidase 2 OS=Pseudomonas aeruginosa (strain PA7) GN=apeB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.034e-20
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 2
Query:   17 NGFHVVGAHTDSPCLKLKPVSKVTKGGYLEVGVQTYGGGLWHTWFDRDLTVAGRVIIREGKDGSGPYSHKLVRIDEPIMRIPTLAIHLDRNVN 295
            +GF +VGAHTDSPCL++KP  ++ + G+L++GV+ YGG L+  WFDRDL++AGRV  R     +G    +LV   + I  IP LAIHL+R  N
Sbjct:   74 SGFRLVGAHTDSPCLRVKPNPEIARNGFLQLGVEVYGGALFAPWFDRDLSLAGRVTFR----ANGKLESRLVDFRKAIAVIPNLAIHLNRAAN 162          
BLAST of CX286856 vs. ExPASy Swiss-Prot
Match: APEB_STRCO (Probable M18 family aminopeptidase 2 OS=Streptomyces coelicolor GN=apeB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.760e-20
Identity = 45/94 (47.87%), Postives = 66/94 (70.21%), Query Frame = 2
Query:   23 FHVVGAHTDSPCLKLKPVSKVTKGGYLEVGVQTYGGGLWHTWFDRDLTVAGRVIIREGKDGSGPYSHKLVRIDEPIMRIPTLAIHLDRNVNSDG 304
            F +VGAHTDSP L++KP       G+ +V V+ YGG L ++W DRDL +AGR+ +R+G       S +LV +D P++R+P LAIH+DRNV+++G
Sbjct:   80 FRIVGAHTDSPNLRVKPRPDTGAHGWRQVAVEIYGGPLMNSWLDRDLGLAGRLSLRDG-------STRLVDVDRPLLRVPQLAIHMDRNVSTEG 166          
BLAST of CX286856 vs. ExPASy Swiss-Prot
Match: APEB_STRAW (Probable M18 family aminopeptidase 2 OS=Streptomyces avermitilis GN=apeB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.760e-20
Identity = 46/94 (48.94%), Postives = 66/94 (70.21%), Query Frame = 2
Query:   23 FHVVGAHTDSPCLKLKPVSKVTKGGYLEVGVQTYGGGLWHTWFDRDLTVAGRVIIREGKDGSGPYSHKLVRIDEPIMRIPTLAIHLDRNVNSDG 304
            F +VGAHTDSP L++KP       G+ ++ V+ YGG L ++W DRDL +AGR+ +R+G       S +LV ID P++R+P LAIHLDR+V++DG
Sbjct:   80 FRIVGAHTDSPNLRVKPRPDSGAHGWRQIAVEIYGGPLLNSWLDRDLGLAGRLSLRDG-------STRLVNIDRPLLRVPQLAIHLDRSVSTDG 166          
BLAST of CX286856 vs. ExPASy Swiss-Prot
Match: APEB_PSEPG (Probable M18 family aminopeptidase 2 OS=Pseudomonas putida (strain GB-1) GN=apeB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.153e-19
Identity = 46/93 (49.46%), Postives = 61/93 (65.59%), Query Frame = 2
Query:   17 NGFHVVGAHTDSPCLKLKPVSKVTKGGYLEVGVQTYGGGLWHTWFDRDLTVAGRVIIREGKDGSGPYSHKLVRIDEPIMRIPTLAIHLDRNVN 295
            NG  +VGAHTDSPCL++KP  ++ + G+L++GV+ YGG L   WFDRDL++AGRV  R      G    +L+    PI  IP LAIHL+R  N
Sbjct:   74 NGIRMVGAHTDSPCLRVKPQPELQRQGFLQLGVEVYGGALLAPWFDRDLSLAGRVTYRR----DGKVESQLIDFKLPIAIIPNLAIHLNRTAN 162          
BLAST of CX286856 vs. ExPASy Swiss-Prot
Match: APEB_PSEP1 (Probable M18 family aminopeptidase 2 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=apeB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.153e-19
Identity = 46/93 (49.46%), Postives = 61/93 (65.59%), Query Frame = 2
Query:   17 NGFHVVGAHTDSPCLKLKPVSKVTKGGYLEVGVQTYGGGLWHTWFDRDLTVAGRVIIREGKDGSGPYSHKLVRIDEPIMRIPTLAIHLDRNVN 295
            NG  +VGAHTDSPCL++KP  ++ + G+L++GV+ YGG L   WFDRDL++AGRV  R      G    +L+    PI  IP LAIHL+R  N
Sbjct:   74 NGIRMVGAHTDSPCLRVKPQPELQRQGFLQLGVEVYGGALLAPWFDRDLSLAGRVTYRR----DGKVESQLIDFKLPIAIIPNLAIHLNRTAN 162          
BLAST of CX286856 vs. ExPASy Swiss-Prot
Match: APEB_PSEPK (Probable M18 family aminopeptidase 2 OS=Pseudomonas putida (strain KT2440) GN=apeB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.506e-19
Identity = 45/93 (48.39%), Postives = 61/93 (65.59%), Query Frame = 2
Query:   17 NGFHVVGAHTDSPCLKLKPVSKVTKGGYLEVGVQTYGGGLWHTWFDRDLTVAGRVIIREGKDGSGPYSHKLVRIDEPIMRIPTLAIHLDRNVN 295
            NG  +VGAHTDSPCL++KP  ++ + G+L++GV+ YGG L   WFDRDL++AGRV  R      G    +L+    P+  IP LAIHL+R  N
Sbjct:   74 NGIRMVGAHTDSPCLRVKPQPELQRQGFLQLGVEVYGGALLAPWFDRDLSLAGRVTYRR----DGKVESQLIDFKLPVAIIPNLAIHLNRTAN 162          
BLAST of CX286856 vs. ExPASy Swiss-Prot
Match: APEB_PSEMY (Probable M18 family aminopeptidase 2 OS=Pseudomonas mendocina (strain ymp) GN=apeB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.506e-19
Identity = 46/96 (47.92%), Postives = 61/96 (63.54%), Query Frame = 2
Query:    8 VAGNGFHVVGAHTDSPCLKLKPVSKVTKGGYLEVGVQTYGGGLWHTWFDRDLTVAGRVIIREGKDGSGPYSHKLVRIDEPIMRIPTLAIHLDRNVN 295
            V   G  +VGAHTDSPCL++KP  ++ + GY ++GV+ YGG L   WFDRDL++AGRV  R      G    +L+   +PI  IP LAIHL+R  N
Sbjct:   71 VVEGGIRLVGAHTDSPCLRVKPSPELQRQGYFQLGVEVYGGALLAPWFDRDLSLAGRVTYRR----DGKVESQLIDFYQPIAVIPNLAIHLNREAN 162          
BLAST of CX286856 vs. ExPASy Swiss-Prot
Match: APEB_PSEPW (Probable M18 family aminopeptidase 2 OS=Pseudomonas putida (strain W619) GN=apeB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.382e-19
Identity = 45/92 (48.91%), Postives = 60/92 (65.22%), Query Frame = 2
Query:   20 GFHVVGAHTDSPCLKLKPVSKVTKGGYLEVGVQTYGGGLWHTWFDRDLTVAGRVIIREGKDGSGPYSHKLVRIDEPIMRIPTLAIHLDRNVN 295
            G  +VGAHTDSPCL++KP  ++ + G+L++GV+ YGG L   WFDRDL++AGRV  R      G    +L+    PI  IP LAIHL+R  N
Sbjct:   75 GIRMVGAHTDSPCLRVKPQPELQRQGFLQLGVEVYGGALLAPWFDRDLSLAGRVTFRR----DGKVESQLIDFKLPIAIIPNLAIHLNRTAN 162          
The following BLAST results are available for this feature:
BLAST of CX286856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
APEB_PSEAB3.034e-2049.46Probable M18 family aminopeptidase 2 OS=Pseudomona... [more]
APEB_PSEA83.034e-2049.46Probable M18 family aminopeptidase 2 OS=Pseudomona... [more]
APEB_PSEA73.034e-2049.46Probable M18 family aminopeptidase 2 OS=Pseudomona... [more]
APEB_STRCO6.760e-2047.87Probable M18 family aminopeptidase 2 OS=Streptomyc... [more]
APEB_STRAW6.760e-2048.94Probable M18 family aminopeptidase 2 OS=Streptomyc... [more]
APEB_PSEPG1.153e-1949.46Probable M18 family aminopeptidase 2 OS=Pseudomona... [more]
APEB_PSEP11.153e-1949.46Probable M18 family aminopeptidase 2 OS=Pseudomona... [more]
APEB_PSEPK1.506e-1948.39Probable M18 family aminopeptidase 2 OS=Pseudomona... [more]
APEB_PSEMY1.506e-1947.92Probable M18 family aminopeptidase 2 OS=Pseudomona... [more]
APEB_PSEPW4.382e-1948.91Probable M18 family aminopeptidase 2 OS=Pseudomona... [more]

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Properties
Property NameValue
Genbank descriptionC01001G11Rv Veg1 Citrus clementina cDNA clone C01001G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286856 ID=CX286856; Name=CX286856; organism=Citrus clementina; type=EST; length=304bp
AAAATATGTTGCTGGGAATGGATTCCATGTAGTCGGTGCTCATACTGACA
GTCCTTGCCTAAAGCTGAAGCCTGTTTCTAAGGTAACAAAAGGTGGGTAT
TTGGAGGTTGGCGTCCAAACATATGGAGGTGGTTTGTGGCATACGTGGTT
CGACCGTGACTTGACAGTTGCAGGAAGGGTGATAATTAGAGAAGGGAAAG
ATGGTTCTGGTCCCTATTCTCATAAACTAGTTAGAATTGACGAACCCATA
ATGCGAATTCCTACACTGGCAATTCACTTGGACAGGAATGTTAATTCTGA
TGGA
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