CX286868

Overview
NameCX286868
Unique NameCX286868
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length580
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX286868 vs. ExPASy Swiss-Prot
Match: DER22_ARATH (Derlin-2.2 OS=Arabidopsis thaliana GN=DER2.2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.749e-11
Identity = 31/73 (42.47%), Postives = 44/73 (60.27%), Query Frame = -3 
Query:  360 PNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVA 578
            P   ++  GL T  A YLPW +L   ++ G+    DLLG+IAGH YYFL  ++P  T +  LKTP +++ L A
Sbjct:  147 PYIHMSFLGLFTFTAAYLPWVLLGFSILVGASAWVDLLGMIAGHAYYFLAEVYPRMTNRRPLKTPSFLKALFA 219
The following BLAST results are available for this feature:
BLAST of CX286868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
DER22_ARATH5.749e-1142.47Derlin-2.2 OS=Arabidopsis thaliana GN=DER2.2 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionC01002A04Rv Veg1 Citrus clementina cDNA clone C01002A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286868 ID=CX286868; Name=CX286868; organism=Citrus clementina; type=EST; length=580bp
AACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTAACCACTAAATTACTCTT
GATTAACACAAAATATTTGCATCGACAATCTTGATGTTAAAAGTTTTTTT
TTCCCCTCTACAAATCAATTTTTTGGTGAAGCAATAGTATCCAACAATCT
GTAAAATGTGAAAATGAAACTTCTTGAACTGTCAGCTCTTCTGGGTTGAA
GGCTTTGCTGCCTTTGTCAGGTGCATCACCTGGAAAAATTACAAGAACGT
TGCCATATTATAATCAATCGCTTAAACGATATGATCTTCCTCTGAAAGCC
ACACCAGTTGTCCTTTCAGGCTGGGCACGATTGATAGCTGGAGCTCCGAT
TCTCCACCTCGCCACCAGTTTTTGTACCCATTTTGGAGTCTTCAACAAGT
TCTTTCCAGTTGCAAGTGGATGTAAGACAGTCAAAAAGTAATACAGATGT
CCTGCTATGATTCCCAGCAGGTCTGGTACAAGGGGTGAACCAAAAATGAC
GTCCAAAGCAAGCATAGCCCATGGTAGATAAAATGCCTTAAGTGTCACGA
GGCCATATATATTGATCTGAGAATTTGGGA
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