CX286869

Overview
NameCX286869
Unique NameCX286869
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length536
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5890 contig Ccv1_Contig5890:495..1030. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286869 vs. ExPASy Swiss-Prot
Match: E132_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 2 OS=Solanum tuberosum GN=GLUB2 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 6.597e-48
Identity = 99/182 (54.40%), Postives = 125/182 (68.68%), Query Frame = 2
Query:    2 SKRDVVALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGLPNENLQRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKP---GDNFARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYFAIAGN-RQISLDYAL 535
            S  +V+ LY   NI R+RLYDPN  AL ALRGSNIEV+LGLPN +++ IAS    A  WVQ NV++F  +VK KYIAVGNE  P     +   + VPA+ NI  A+  AGLGN IKVST ++   +  S+PPS+GSF+ D R   DP++ FL D R+PLLVN+YPYF+ +GN  QISL YAL
Sbjct:   40 SHSEVIQLYKSRNIGRLRLYDPNQGALNALRGSNIEVILGLPNVDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSSLTSFQVPALVNIYKAVGEAGLGNDIKVSTSVDMTLIGNSYPPSQGSFRNDVRWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYAL 221          
BLAST of CX286869 vs. ExPASy Swiss-Prot
Match: E131_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 1 (Fragment) OS=Solanum tuberosum GN=GLUB1 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 6.597e-48
Identity = 99/182 (54.40%), Postives = 125/182 (68.68%), Query Frame = 2
Query:    2 SKRDVVALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGLPNENLQRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKP---GDNFARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYFAIAGN-RQISLDYAL 535
            S  +V+ LY   NI R+RLYDPN  AL ALRGSNIEV+LGLPN +++ IAS    A  WVQ NV++F  +VK KYIAVGNE  P     +   + VPA+ NI  A+  AGLGN IKVST ++   +  S+PPS+GSF+ D R   DP++ FL D R+PLLVN+YPYF+ +GN  QISL YAL
Sbjct:   14 SHSEVIQLYKSRNIGRLRLYDPNHGALNALRGSNIEVILGLPNVDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSSLTSFQVPALVNIYKAVGEAGLGNDIKVSTSVDMTLIGNSYPPSQGSFRNDVRWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYAL 195          
BLAST of CX286869 vs. ExPASy Swiss-Prot
Match: E13E_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform GGIB50 OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.125e-47
Identity = 99/179 (55.31%), Postives = 127/179 (70.95%), Query Frame = 2
Query:   11 DVVALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGLPNENLQRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKP--GDNF-ARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYFAIAGN-RQISLDYAL 535
            +V+ LY   NI R+RLYDPN  AL+AL+GSNIEVMLGLPN +++ IAS    A  WVQ NV++F  +VK KYIAVGNE  P  G ++   +L PAM NI  AI  AGLGN IKVST ++   +  S+PPS+GSF+ D R  +D ++ FL D R+PLLVN+YPYF+ +GN  QISL Y+L
Sbjct:   51 EVIQLYKSRNIGRLRLYDPNHGALQALKGSNIEVMLGLPNSDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSYLTSFLTPAMVNIYKAIGEAGLGNNIKVSTSVDMTLIGNSYPPSQGSFRNDARWFVDAIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYSL 229          
BLAST of CX286869 vs. ExPASy Swiss-Prot
Match: E13B_PEA (Glucan endo-1,3-beta-glucosidase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.919e-47
Identity = 100/179 (55.87%), Postives = 127/179 (70.95%), Query Frame = 2
Query:   11 DVVALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGLPNENLQRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKP--GDNF-ARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYFAIAGN-RQISLDYAL 535
            +V+ALY  NNI+RMRLYDPN  AL ALR S IE++LG+PN +LQ +A+NQ  A  WVQ NV NF  +VK KYIAVGNE  P  G ++ A+Y++PA +N+  AI   GL +QIKV+T I+   +  SFPPS+GSF+ D R  LDP I +L    +PLLVN+YPYF+  GN R ISL YAL
Sbjct:   50 EVIALYKANNIKRMRLYDPNQPALNALRDSGIELILGIPNSDLQTLATNQDSARQWVQRNVLNFYPSVKIKYIAVGNEVSPVGGSSWLAQYVLPATQNVYQAIRAQGLHDQIKVTTAIDMTLIGNSFPPSKGSFRSDVRSYLDPFIGYLVYAGAPLLVNVYPYFSHIGNPRDISLPYAL 228          
BLAST of CX286869 vs. ExPASy Swiss-Prot
Match: E13B_PHAVU (Glucan endo-1,3-beta-glucosidase, basic isoform OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 9.526e-47
Identity = 97/182 (53.30%), Postives = 127/182 (69.78%), Query Frame = 2
Query:    2 SKRDVVALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGLPNENLQRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKP---GDNFARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYFAIAGN-RQISLDYAL 535
            S  +V+ LY  NNIRRMRLYDPN  AL+ALR S IE++LG+PN +LQ +A+N   A  WVQ NV NF  +VK KYIAVGNE  P      +A+Y++PA++N+  A+   GL +QIKVST I+   +  S+PPS+GSF+ D R  LDP+I +L    +PL VN+YPYF+ +GN R ISL YAL
Sbjct:   15 SANEVINLYRSNNIRRMRLYDPNQAALQALRNSGIELILGVPNSDLQGLATNADTARQWVQRNVLNFWPSVKIKYIAVGNEVSPVGGSSWYAQYVLPAVQNVYQAVRAQGLHDQIKVSTAIDMTLIGNSYPPSQGSFRGDVRSYLDPIIGYLLYASAPLHVNVYPYFSYSGNPRDISLPYAL 196          
BLAST of CX286869 vs. ExPASy Swiss-Prot
Match: E13B_BRACM (Glucan endo-1,3-beta-glucosidase OS=Brassica campestris GN=BGL PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.244e-46
Identity = 97/175 (55.43%), Postives = 129/175 (73.71%), Query Frame = 2
Query:   11 DVVALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGLPNENLQRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDNFARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYFAIAGNRQISLDYAL 535
            +VVA++ Q +I RMR+Y PN +AL ALRGSNIE +L +PN +L+R+A +QAEANTWV++NV+ + N+V+FKYI+VGNE KPG+  A  L+ AM+NI  A++ AGL N IKVST    G    ++PPSRG FK +YR  L P+I FL + RSPLLVN+Y YF    NR +SL +AL
Sbjct:   43 EVVAMFKQYSIPRMRMYGPNPDALNALRGSNIEFILDVPNGDLKRLADSQAEANTWVRDNVQKY-NDVRFKYISVGNEVKPGEPGAAALIQAMQNIDRALSAAGLSN-IKVSTTTFMGPSRNTYPPSRGRFKDEYRNFLQPVIGFLVNKRSPLLVNIYTYFGYM-NRDVSLQFAL 214          
BLAST of CX286869 vs. ExPASy Swiss-Prot
Match: E13A_ARATH (Glucan endo-1,3-beta-glucosidase, acidic isoform OS=Arabidopsis thaliana GN=BG2 PE=1 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 1.625e-46
Identity = 95/179 (53.07%), Postives = 133/179 (74.30%), Query Frame = 2
Query:    2 SKRDVVALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGLPNENLQRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDNFARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYFAIAGN-RQISLDYAL 535
            S  DVVALY Q NI+RMRLY P+  AL ALRGS+IE++L +P+ +L+R+AS+Q EA+ WVQ NV+++ + V+F+YI VGNE KP  +   +L+ AM+NI+NA++GAGL  ++KVST I T    ++ PPS+G F+ +Y+  L+P+I FL   +SPLLVNLYPYF+  G+   I LDYAL
Sbjct:   45 SPSDVVALYKQQNIQRMRLYGPDPGALAALRGSDIELILDVPSSDLERLASSQTEADKWVQENVQSYRDGVRFRYINVGNEVKP--SVGGFLLQAMQNIENAVSGAGL--EVKVSTAIATDTTTDTSPPSQGRFRDEYKSFLEPVIGFLASKQSPLLVNLYPYFSYMGDTANIHLDYAL 219          
BLAST of CX286869 vs. ExPASy Swiss-Prot
Match: E13B_VITVI (Glucan endo-1,3-beta-glucosidase OS=Vitis vinifera GN=GSVIVT00022223001 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.053e-45
Identity = 92/166 (55.42%), Postives = 124/166 (74.70%), Query Frame = 2
Query:   50 MRLYDPNIEALEALRGSNIEVMLGLPNENLQRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKP-GDN--FARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYFAIAGNRQ-ISLDYAL 535
            MR+YDPN + L+AL+GS IE++L +PN +LQ +AS+ + A+TWVQNNV N+A++VKF+YIAVGNE  P G N  +A+Y++PAM+N+Q+AI  AGL  QIKVST   +  L  S+PPS GSF  D    ++P+I FL +N SPLL N+YPYF+  G+ Q I LDYAL
Sbjct:    1 MRIYDPNSDTLQALKGSGIELILDVPNTSLQSLASDASAASTWVQNNVVNYASDVKFRYIAVGNEVLPTGSNAQYAQYVLPAMKNVQSAITSAGLQGQIKVSTATYSSVLGTSYPPSAGSFSSDASSFINPIISFLAENGSPLLANIYPYFSYTGDTQNIRLDYAL 166          
BLAST of CX286869 vs. ExPASy Swiss-Prot
Match: E13A_SOLLC (Glucan endo-1,3-beta-glucosidase A OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 4.892e-43
Identity = 87/181 (48.07%), Postives = 124/181 (68.51%), Query Frame = 2
Query:    2 SKRDVVALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGLPNENLQRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDN---FARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYFAIAGNRQISLDYAL 535
            S +DV+ LYN NNI++MR+Y P      AL+GSNIE++L +PN++L+ +A N ++   WVQ+N+RN   +VKFKYIAVGNE  PG +   +AR++ PAM NI NA++ AGL NQIKVST    G L  ++PP    F+ +Y+  ++P+I FL+ +  PLL N+YPYF  A +  + L YAL
Sbjct:   39 SDQDVIKLYNSNNIKKMRIYFPETNVFNALKGSNIEIILDVPNQDLEALA-NPSKRQGWVQDNIRNHFPDVKFKYIAVGNEVDPGRDSGKYARFVGPAMENIYNALSSAGLQNQIKVSTATYLGLLTNTYPPRDSIFRDEYKSFINPIIGFLSRHNLPLLANIYPYFGHADD-NVPLPYAL 217          
BLAST of CX286869 vs. ExPASy Swiss-Prot
Match: E13K_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GL161 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.428e-42
Identity = 82/181 (45.30%), Postives = 127/181 (70.17%), Query Frame = 2
Query:    2 SKRDVVALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGLPNENLQRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKP--GDNFARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYFA-IAGNRQISLDYAL 535
            S +DV+ LYN N IR++R+Y P+    +AL GSNIE++LG+PN++L+ +A N + AN WVQ+N+R+    VKFKYI++GN+  P   D ++ +L+ AM+N+ NA+  AGL + IKVSTV  +G L  ++PP R  F+++++  ++P+I+FL  N  PLL N+YPYF  ++    +SL YAL
Sbjct:   25 SDQDVINLYNANGIRKLRIYYPDKNIFKALNGSNIEIILGVPNQDLEALA-NSSIANGWVQDNIRSHFPYVKFKYISIGNKVSPTNNDQYSEFLLQAMKNVYNALAAAGLQDMIKVSTVTYSGVLANTYPPERSIFREEFKSFINPIIQFLARNNLPLLANVYPYFVHVSNTADVSLSYAL 204          
The following BLAST results are available for this feature:
BLAST of CX286869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
E132_SOLTU6.597e-4854.40Glucan endo-1,3-beta-glucosidase, basic isoform 2 ... [more]
E131_SOLTU6.597e-4854.40Glucan endo-1,3-beta-glucosidase, basic isoform 1 ... [more]
E13E_TOBAC1.125e-4755.31Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13B_PEA1.919e-4755.87Glucan endo-1,3-beta-glucosidase OS=Pisum sativum ... [more]
E13B_PHAVU9.526e-4753.30Glucan endo-1,3-beta-glucosidase, basic isoform OS... [more]
E13B_BRACM1.244e-4655.43Glucan endo-1,3-beta-glucosidase OS=Brassica campe... [more]
E13A_ARATH1.625e-4653.07Glucan endo-1,3-beta-glucosidase, acidic isoform O... [more]
E13B_VITVI1.053e-4555.42Glucan endo-1,3-beta-glucosidase OS=Vitis vinifera... [more]
E13A_SOLLC4.892e-4348.07Glucan endo-1,3-beta-glucosidase A OS=Solanum lyco... [more]
E13K_TOBAC2.428e-4245.30Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]

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Properties
Property NameValue
Genbank descriptionC01002A05Rv Veg1 Citrus clementina cDNA clone C01002A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286869 ID=CX286869; Name=CX286869; organism=Citrus clementina; type=EST; length=536bp
ATCAAAACGAGATGTCGTAGCTCTCTACAACCAAAACAACATCAGAAGAA
TGAGACTCTATGATCCAAACATAGAGGCACTCGAAGCTCTCAGAGGCTCC
AACATTGAAGTCATGCTGGGCCTTCCCAACGAGAACCTCCAAAGAATCGC
TTCCAATCAAGCCGAAGCAAACACTTGGGTCCAAAACAACGTCCGAAATT
TTGCTAACAATGTCAAGTTCAAATACATTGCTGTAGGAAATGAAGCAAAA
CCTGGAGATAACTTCGCTCGGTACCTTGTTCCCGCCATGAGAAACATACA
AAACGCCATCAACGGAGCCGGCCTTGGAAACCAAATCAAGGTTTCCACTG
TTATCGAAACTGGAGCTCTTGACGAATCTTTCCCTCCGTCAAGAGGCTCA
TTTAAGCAAGATTACAGACCCATTCTTGATCCCCTCATTCGCTTCCTCAA
CGATAACAGATCCCCCTTGCTTGTCAACTTGTACCCTTACTTCGCAATTG
CTGGTAACCGCCAAATATCTCTGGATTATGCACTAT
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