CX286869

Overview
NameCX286869
Unique NameCX286869
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length536
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286869 vs. ExPASy Swiss-Prot
Match: E1312_ARATH (Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 8.102e-30
Identity = 68/180 (37.78%), Postives = 104/180 (57.78%), Query Frame = 2
Query:    2 SKRDVVALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGLPNENLQRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPG-DNFARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYFAIA-GNRQISLDYAL 535
            S   V  L    NI+ +R+YD NI+ L+A   + IE+M+G+PN +L   A  Q+  +TW+ NN+  +  + K   I+VG E     DN    ++PAMRNI  A+  +GL  +IK+S+      L  SFPPS  SF + +   L P++ FL +N SP +++LYPY+A      ++ L+YAL
Sbjct:   40 SPNRVSELIQHLNIKFVRIYDANIDVLKAFANTGIELMIGVPNADLLAFAQFQSNVDTWLSNNILPYYPSTKITSISVGLEVTEAPDNATGLVLPAMRNIHTALKKSGLDKKIKISSSHSLAILSRSFPPSSASFSKKHSAFLKPMLEFLVENESPFMIDLYPYYAYRDSTEKVPLEYAL 219          
BLAST of CX286869 vs. ExPASy Swiss-Prot
Match: E13E_HORVU (Glucan endo-1,3-beta-glucosidase GV OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.058e-29
Identity = 75/180 (41.67%), Postives = 109/180 (60.56%), Query Frame = 2
Query:    2 SKRDVVALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGLPN-ENLQRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDNFARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYFAIAGNR--QISLDYA 532
            S+ DVV LY   NI  MR+Y+P+ EAL ALRGS I ++L +   + ++R+  + + A  WV++NV+ +  +V  +YIAVGNE   GD     ++ AM+N+ NA+  A L + IKVST +    +  SFPPS G F+      L P+ RFL+   +P L N+YPYFA   +R   I L+YA
Sbjct:   18 SRSDVVQLYKSRNIHAMRIYNPDQEALTALRGSGIFLILDVGGVDEVRRLGRDPSYAAGWVRSNVQAYYPDVLIRYIAVGNEVPAGD--TGIILLAMQNVHNALASANLSSSIKVSTAVRFDVITNSFPPSSGVFRDPSG--LVPIARFLDSTGAPFLANVYPYFAYRDDRGQNIRLNYA 193          
BLAST of CX286869 vs. ExPASy Swiss-Prot
Match: E13A_HORVU (Glucan endo-1,3-beta-glucosidase GI OS=Hordeum vulgare PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 4.021e-29
Identity = 79/176 (44.89%), Postives = 105/176 (59.66%), Query Frame = 2
Query:   11 DVVALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGLP-NENLQRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDNFARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYFAIAGN-RQISLDYA 532
            +VV LY  N +  MR+Y  + +AL ALRGS I ++L +  N+ L  +A+N + A  WV++NVR +   V  KYIA GNE   GD   + +VPAMRN+  A+   GLG  IKVST I   A+  +FPPS G F Q Y   +  + R L    +PLL N+YPYFA   N R I L+YA
Sbjct:   18 EVVQLYRSNGLTGMRIYFADAKALSALRGSGIGLILDVGGNDVLASLAANASNAANWVRDNVRPYYPAVNIKYIAAGNEVWGGD--TQNIVPAMRNLGAALKAPGLGT-IKVSTSIRFDAVTNTFPPSNGVFAQAY---MTDVARLLASTGAPLLTNVYPYFAYKDNPRDIQLNYA 187          
BLAST of CX286869 vs. ExPASy Swiss-Prot
Match: E136_ARATH (Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis thaliana GN=At5g58090 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.170e-28
Identity = 71/179 (39.66%), Postives = 103/179 (57.54%), Query Frame = 2
Query:   14 VVALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGLPNENLQRIASNQAEANTWVQNNVRNF--ANNVKFKYIAVGNEAKPGDNFARYL---VPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFP-PSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYFAIAGNRQISLDYA 532
            VV +  +N I++++L+D   + L AL  S IEVM+G+PNE L  +AS+   A  WV  NV      +NV  +Y+AVGNE         YL    PA+RNIQ AI  AGL NQ+KV+  +     D S   PS G F+ + R ++  +++FL++N  P  VN+YPY ++  N    +DYA
Sbjct:   39 VVRMLRENGIQKVKLFDAEYDTLRALGKSGIEVMVGIPNEMLATLASSLKAAEKWVAKNVSTHISTDNVNIRYVAVGNEPFLSTYNGSYLSTTFPALRNIQIAIIKAGLQNQVKVTCPLNADVYDSSTTFPSGGDFRANIRDLMITIVKFLSENGGPFTVNIYPYISLYTNPDFPVDYA 217          
BLAST of CX286869 vs. ExPASy Swiss-Prot
Match: E13D_HORVU (Glucan endo-1,3-beta-glucosidase GIV OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.583e-28
Identity = 74/178 (41.57%), Postives = 103/178 (57.87%), Query Frame = 2
Query:    5 KRDVVALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGLPNENLQRIASNQAEANTWVQNNVRNF-ANNVKFKYIAVGNEAKPGDNFARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYFAIAGN-RQISLDYA 532
            +R+VV LY    I  MR+Y    +A+ AL GS I +MLG  N ++  +A + + A +WV  NV+ + +  V  +YIAVGNE   G   A+ ++ AMRN+  A+  A LG  IKVST +    +  SFPPS   F Q   P +  + R L    +PLL N+YPYFA +GN R I L+YA
Sbjct:   15 RREVVQLYRSKGITNMRIYSVQPQAIRALHGSGIRLMLGTTNNDVAVLAGSLSAATSWVHANVKPYHSAGVTIRYIAVGNEITGG--AAQSILAAMRNLNKALAAARLGG-IKVSTAVRFDVITNSFPPSSAVFAQ---PYMVDIARHLASTNAPLLANVYPYFAYSGNPRDIKLNYA 186          
BLAST of CX286869 vs. ExPASy Swiss-Prot
Match: E13B_SOYBN (Glucan endo-1,3-beta-glucosidase (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.904e-28
Identity = 65/144 (45.14%), Postives = 89/144 (61.81%), Query Frame = 2
Query:  104 IEVMLGLPNENLQRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDNFARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYFAIAGNRQISLDYAL 535
            IE+++ +  E LQ +  + A A  WV   V  ++ +V FKYIAVGNE  P  N A+Y++ AM NIQNAI+       IKVST I++  +  S+PP+ G F  D  P + P+I FL  N +PLL N+YPYFA A ++ I L YAL
Sbjct:    3 IELIMDVAKETLQSLTDSNA-ATDWVNKYVTPYSQDVNFKYIAVGNEIHPNTNVAQYILSAMTNIQNAISSRKF--TIKVSTAIDSTLITNSYPPNDGVFTSDAEPYIKPIINFLVSNGAPLLANVYPYFAYANDQSIPLAYAL 143          
BLAST of CX286869 vs. ExPASy Swiss-Prot
Match: E133_ARATH (Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 9.904e-28
Identity = 73/180 (40.56%), Postives = 102/180 (56.67%), Query Frame = 2
Query:    2 SKRDVVALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGLPNENLQRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPG-DNFARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYF-AIAGNRQISLDYAL 535
            S   VVAL    NI R+RLYD +   L A   + ++V++ +PN+ L  I+ + A A  WV  NV  +        IAVG+E      N A  LV A++ IQ A+  A L  QIKVST   +  + +SFPPS+  F + + P++ PL++FL    SPLL+N+YPYF  +  N  I LDYAL
Sbjct:   36 SPTQVVALLKSQNINRVRLYDADRSMLLAFAHTGVQVIISVPNDQLLGISQSNATAANWVTRNVAAYYPATNITTIAVGSEVLTSLTNAASVLVSALKYIQAALVTANLDRQIKVSTPHSSTIILDSFPPSQAFFNKTWDPVIVPLLKFLQSTGSPLLLNVYPYFDYVQSNGVIPLDYAL 215          
BLAST of CX286869 vs. ExPASy Swiss-Prot
Match: E138_ARATH (Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 4.161e-26
Identity = 65/183 (35.52%), Postives = 102/183 (55.74%), Query Frame = 2
Query:    8 RDVVALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGLPNENLQRIASNQAEANTWVQNNVR--NFANNVKFKYIAVGNEA---KPGDNFARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDE--SFP-PSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYFAIAGNRQISLDYA 532
            + VV +   NNI +++L+D +   + AL GS +EVM+ +PN+ L ++ ++   A  WV+ NV   NF   V   ++AVGNE        +F     PA+ NIQNA+N AGLGN +K +  +     D   S P PS G F+ D    +  ++ FL  N +P+ +N+YP+ ++ GN    L+YA
Sbjct:   40 KTVVQMLKDNNINKVKLFDADETTMGALAGSGLEVMVAIPNDQL-KVMTSYDRAKDWVRKNVTRYNFDGGVNITFVAVGNEPFLKSYNGSFINLTFPALANIQNALNEAGLGNSVKATVPLNADVYDSPASNPVPSAGRFRPDIIGQMTQIVDFLGKNNAPITINIYPFLSLYGNDDFPLNYA 221          
BLAST of CX286869 vs. ExPASy Swiss-Prot
Match: E1311_ARATH (Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.581e-25
Identity = 65/181 (35.91%), Postives = 99/181 (54.70%), Query Frame = 2
Query:    2 SKRDVVALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGLPNENLQRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNE--AKPGDNFARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYFAIAGN-RQISLDYAL 535
            S  DV+ L       +++LYD N + L+A   + IE ++GL NE L ++  + ++A TW++ NV  F        I +GNE  A    +    L+PAM+ + +A+  AGL +QI V+T      L  SFPPS G F+ D    L P++ F     SP L+N YP+FA  GN +++ LD+ L
Sbjct:   42 SPTDVIPLIKSIGATKVKLYDANPQILKAFSNTGIEFIIGLGNEYLSKM-KDPSKALTWIKQNVTPFLPATNITCITIGNEILALNDSSLTTNLLPAMQGVHSALITAGLSDQISVTTAHSLSILKSSFPPSAGEFQPDLLDSLTPILEFHRKTDSPFLINAYPFFAYKGNPKEVPLDFVL 221          
BLAST of CX286869 vs. ExPASy Swiss-Prot
Match: E137_ARATH (Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 2.283e-24
Identity = 60/164 (36.59%), Postives = 92/164 (56.10%), Query Frame = 2
Query:   11 DVVALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGLPNENLQRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGD--NFARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYFA 496
            + V L    +I+++RLY  +   ++AL G+ + +++G  N ++  +AS+   A  W+ +NV  F    K   I VGNE    +  N    L+PAM+N+Q A+    LG +IKVSTV     L  S PPS GSF   Y+  L  +++FL+D  SP  +N YP+FA
Sbjct:   42 ETVKLLQSTSIQKVRLYGADPAIIKALAGTGVGIVIGAANGDVPSLASDPNAATQWINSNVLPFYPASKIMLITVGNEILMSNDPNLVNQLLPAMQNVQKALEAVSLGGKIKVSTVNSMTVLGSSDPPSSGSFAAGYQTGLKGILQFLSDTGSPFAINPYPFFA 205          
The following BLAST results are available for this feature:
BLAST of CX286869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
E1312_ARATH8.102e-3037.78Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis... [more]
E13E_HORVU1.058e-2941.67Glucan endo-1,3-beta-glucosidase GV OS=Hordeum vul... [more]
E13A_HORVU4.021e-2944.89Glucan endo-1,3-beta-glucosidase GI OS=Hordeum vul... [more]
E136_ARATH1.170e-2839.66Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis ... [more]
E13D_HORVU7.583e-2841.57Glucan endo-1,3-beta-glucosidase GIV OS=Hordeum vu... [more]
E13B_SOYBN9.904e-2845.14Glucan endo-1,3-beta-glucosidase (Fragment) OS=Gly... [more]
E133_ARATH9.904e-2840.56Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis ... [more]
E138_ARATH4.161e-2635.52Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis ... [more]
E1311_ARATH1.581e-2535.91Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis... [more]
E137_ARATH2.283e-2436.59Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01002A05Rv Veg1 Citrus clementina cDNA clone C01002A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286869 ID=CX286869; Name=CX286869; organism=Citrus clementina; type=EST; length=536bp
ATCAAAACGAGATGTCGTAGCTCTCTACAACCAAAACAACATCAGAAGAA
TGAGACTCTATGATCCAAACATAGAGGCACTCGAAGCTCTCAGAGGCTCC
AACATTGAAGTCATGCTGGGCCTTCCCAACGAGAACCTCCAAAGAATCGC
TTCCAATCAAGCCGAAGCAAACACTTGGGTCCAAAACAACGTCCGAAATT
TTGCTAACAATGTCAAGTTCAAATACATTGCTGTAGGAAATGAAGCAAAA
CCTGGAGATAACTTCGCTCGGTACCTTGTTCCCGCCATGAGAAACATACA
AAACGCCATCAACGGAGCCGGCCTTGGAAACCAAATCAAGGTTTCCACTG
TTATCGAAACTGGAGCTCTTGACGAATCTTTCCCTCCGTCAAGAGGCTCA
TTTAAGCAAGATTACAGACCCATTCTTGATCCCCTCATTCGCTTCCTCAA
CGATAACAGATCCCCCTTGCTTGTCAACTTGTACCCTTACTTCGCAATTG
CTGGTAACCGCCAAATATCTCTGGATTATGCACTAT
back to top