CX286874

Overview
NameCX286874
Unique NameCX286874
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length403
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286874 vs. ExPASy Swiss-Prot
Match: SCP15_ARATH (Serine carboxypeptidase-like 15 OS=Arabidopsis thaliana GN=SCPL15 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.810e-11
Identity = 42/144 (29.17%), Postives = 71/144 (49.31%), Query Frame = 2
Query:    5 GYVEVRPKAH--MFWWLYKSPYRIENPSKPWPIILWLQGGPGASGVGIGNFEEVGPF----DTY------LKPRNSTWLKKADLLFVDNPVGTGYSYAEDNSSFVKNDVEAANDLTTLLMELFNKNEILQKSPLFIVAESYGGK 400
            GY+ V  K    +F++  KS    EN  +  P+++WL GGPG S    G   E GP     +TY      L     +W K A+++++D PVGTG+SY+ +  + + +D  +   +   + +   K+     +P ++   SY GK
Sbjct:   45 GYIGVGQKEEDQLFYYFIKS----ENNPEEDPLLVWLTGGPGCSSFS-GLVYENGPLAFKVETYNGSVPTLVSTTYSWTKVANIIYLDQPVGTGFSYSRNPFADIPSDTGSVKRVNEFVRKWLAKHPEYFSNPFYVTGNSYSGK 183          
BLAST of CX286874 vs. ExPASy Swiss-Prot
Match: YXD2_CAEEL (Uncharacterized serine carboxypeptidase C08H9.1 OS=Caenorhabditis elegans GN=C08H9.1 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.588e-11
Identity = 38/110 (34.55%), Postives = 58/110 (52.73%), Query Frame = 2
Query:   95 IILWLQGGPGASGVGIGNFEEVGPFDTYLKPRN-----STWLKKADLLFVDNPVGTGYSYAEDNSSFVK-NDVEAANDLTTLLMELF-NKNEILQKSPLFIVAESYGGKF 403
            +I+W  GGPG S +    FEE GP       ++      +W  KA++LF+++P+G G+SY  + S+F K ND   A      +++ F  K+        FI AESYGG +
Sbjct:   69 LIIWFNGGPGCSSLS-AFFEEFGPLYVNFGGKSLFENVHSWYHKANILFLESPIGVGFSYDTEQSNFTKVNDDSIAEQNFNSVIDFFQRKHSSYVNHDFFIAAESYGGVY 177          
The following BLAST results are available for this feature:
BLAST of CX286874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
SCP15_ARATH5.810e-1129.17Serine carboxypeptidase-like 15 OS=Arabidopsis tha... [more]
YXD2_CAEEL7.588e-1134.55Uncharacterized serine carboxypeptidase C08H9.1 OS... [more]

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Properties
Property NameValue
Genbank descriptionC01002A10Rv Veg1 Citrus clementina cDNA clone C01002A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286874 ID=CX286874; Name=CX286874; organism=Citrus clementina; type=EST; length=403bp
GTGGGGGTATGTTGAAGTTAGGCCAAAAGCACACATGTTTTGGTGGCTAT
ATAAAAGTCCATACAGAATTGAAAATCCCTCAAAGCCATGGCCTATCATT
CTTTGGTTGCAAGGTGGCCCTGGTGCTTCAGGAGTTGGGATTGGGAATTT
TGAAGAGGTTGGGCCATTTGACACTTATTTGAAGCCAAGGAATTCAACAT
GGTTGAAGAAAGCTGACCTATTATTTGTTGACAATCCTGTGGGAACAGGA
TACAGCTATGCTGAGGATAATAGCTCGTTTGTGAAAAACGATGTTGAGGC
AGCAAATGATTTAACTACATTGCTAATGGAGTTATTTAACAAGAATGAAA
TTCTGCAAAAGAGTCCTCTGTTTATTGTGGCAGAGTCTTATGGAGGCAAA
TTT
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