CX286879

Overview
NameCX286879
Unique NameCX286879
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length521
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig326 contig Ccv1_Contig326:82..602. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 3.044e-39
Identity = 76/156 (48.72%), Postives = 109/156 (69.87%), Query Frame = 2
Query:   47 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 514
            K VL+GD G GKS+L++RF + +F    +STIG  F ++ + +++  +K +IWDTAGQERY ++   YYRGA  A+IVYDIT Q+SF+   +W++EL+   + N+V+ L GNK DLL  R V+ EEAQA+A EN L F+ETSA  A+NV + F  +
Sbjct:   12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTV 167          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 3.044e-39
Identity = 78/156 (50.00%), Postives = 106/156 (67.95%), Query Frame = 2
Query:   47 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 514
            KLVL+GD G GKS+L+ RF K +F    +STIG  F ++T  V    VK +IWDTAGQERY ++   YYRGA  A+++YD+T  A+FE A +W++EL+   +PN+V+ L GNK DL     V  EEA+A+A+   L+FMETSA  ATNV + F E+
Sbjct:   15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEV 170          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 5.192e-39
Identity = 77/156 (49.36%), Postives = 108/156 (69.23%), Query Frame = 2
Query:   47 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 514
            K+VL+GD G GKS+L+ RF K +F    +STIG  F ++TL V+   VK +IWDTAGQERY ++   YYRGA  A++VYD+T +A+FE   +W++EL+   +PN+V+ L GNK+DL     V  E+ ++YA++  L FMETSA  ATNV D F E+
Sbjct:   15 KVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEV 170          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.157e-38
Identity = 77/156 (49.36%), Postives = 109/156 (69.87%), Query Frame = 2
Query:   47 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 514
            KLVL+GD G GKS+L+ RF K +F    +STIG  F ++TL V+   VK +IWDTAGQERY ++   YYRGA  A++VYD+T +A+FE A +W++EL+   +PN+V+ L GNK+DL     V  E+ +++A+   L+FMETSA  ATNV + F E+
Sbjct:   15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEV 170          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.973e-38
Identity = 74/156 (47.44%), Postives = 108/156 (69.23%), Query Frame = 2
Query:   47 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 514
            K+VL+GD   GKS ++ RF + +F    ++TIG  F ++TLA+   +VK +IWDTAGQERY ++   YYRGA  A++VYDIT + +F+   +W++EL+A  + N+V+ L GNK DL D R V  E+A+ +AQ+ GLFF+ETSA  ATN+ D F  +
Sbjct:   17 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTV 172          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.973e-38
Identity = 74/156 (47.44%), Postives = 110/156 (70.51%), Query Frame = 2
Query:   47 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 514
            K+VL+GD G GKS+L+ RF K +F    +STIG  F +++L V+D  +K +IWDTAGQERY ++   YYRGA  A++VYD+T  ++FE  + W++EL+   +PN+V+ L GNK+DL     V  E+A+++A++  L+FMETSA  ATNV + F E+
Sbjct:   15 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEV 170          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 5.740e-38
Identity = 75/156 (48.08%), Postives = 108/156 (69.23%), Query Frame = 2
Query:   47 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 514
            KLVL+GD G GKS+L+ RF + +F    +STIG  F ++++ V+D  VK +IWDTAGQERY ++   YYRGA  A++VYDIT   +FE  ++W++EL+   + N+V+ L GNKADL   R V+ E+A+A+A+    FFMETSA  + NV + F E+
Sbjct:   16 KLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEV 171          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 9.792e-38
Identity = 76/156 (48.72%), Postives = 104/156 (66.67%), Query Frame = 2
Query:   47 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 514
            K+VL+GD G GKS+L+ RF + +F    +STIG  F ++TL V   TVK +IWDTAGQERY ++   YYRGA  A++VYD+T   +FE   +W++EL+   + N+V+ L GNK DL   R V  E+AQ+YA++ GL F+ETSA  A NV   F  I
Sbjct:   14 KVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTI 169          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.279e-37
Identity = 73/156 (46.79%), Postives = 109/156 (69.87%), Query Frame = 2
Query:   47 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 514
            KLVL+GD G GKS+L+ RF + +F    +STIG  F +++L ++   +K +IWDTAGQERY ++   YYRGA  A++VYD+T   +FE A +W++EL+   +PN+V+ L GNK+DL     V+ E+ +A+A++  L+FMETSA  ATNV + F E+
Sbjct:   15 KLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEV 170          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.181e-37
Identity = 73/155 (47.10%), Postives = 107/155 (69.03%), Query Frame = 2
Query:   47 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE 511
            KLVL+GD G GKS+L+ RF K +F    +STIG  F +++L +++  +K +IWDTAGQERY ++   YYRGA  A++VYD+T   ++E   +W++EL+   +PN+V+ L GNK+DL     V+ +EA+  A+  GL+FMETSA  ATNV + F E
Sbjct:   15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTE 169          
The following BLAST results are available for this feature:
BLAST of CX286879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT3_SCHPO3.044e-3948.72GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RAA1A_ARATH3.044e-3950.00Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
RAA1B_ARATH5.192e-3949.36Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
RB11D_LOTJA1.157e-3849.36Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RB11D_TOBAC1.973e-3847.44Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
RAA1C_ARATH1.973e-3847.44Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
RB11B_TOBAC5.740e-3848.08Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RAA2A_ARATH9.792e-3848.72Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
RB11E_LOTJA1.279e-3746.79Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
YPT3_NICPL2.181e-3747.10Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]

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Properties
Property NameValue
Genbank descriptionC01002B04Rv Veg1 Citrus clementina cDNA clone C01002B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286879 ID=CX286879; Name=CX286879; organism=Citrus clementina; type=EST; length=521bp
ATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAATGCTAAAT
TGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTGTACTGCGC
TTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATTGGAGCTGC
CTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAAATTTGAGA
TTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTCCAATGTAC
TATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACAAATCAAGC
CTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGCACAAGGCA
ATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACTTGTTGGAT
GCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAGGAAAATGG
CCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCAATGTGAATGACA
TTTTCTATGAAATAGCAAAGA
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