CX286879

Overview
NameCX286879
Unique NameCX286879
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length521
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig326 contig Ccv1_Contig326:82..602. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 2.849e-37
Identity = 72/156 (46.15%), Postives = 108/156 (69.23%), Query Frame = 2
Query:   47 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 514
            K+VL+GD G GKS+L+ RF + +F    +STIG  F +++L V+   VK +IWDTAGQERY ++   YYRGA  A++VYD+T  ++FE  ++W++EL+   +PN+V+ L GNK+DL     V  +E +A+A+   L+FMETSA  +TNV + F E+
Sbjct:   16 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEV 171          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.849e-37
Identity = 73/156 (46.79%), Postives = 107/156 (68.59%), Query Frame = 2
Query:   47 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 514
            K+VL+GD G GKS+++ RF + +F    +STIG  F ++TL V   TVK +IWDTAGQERY ++   YYRGA  A++VYDIT + +F+  ++W++EL+   + N+V+ +AGNK+DL   R V+ E+ QA A++ GL F+ETSA  A N+   F  I
Sbjct:   14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTI 169          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.849e-37
Identity = 72/153 (47.06%), Postives = 106/153 (69.28%), Query Frame = 2
Query:   47 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF 505
            K+VL+GD   GKS ++ RF + +F    +STIG  F ++TL ++  TVK +IWDTAGQERY ++   YYRGA  A++VYDIT + +F+   +W++EL+   + N+V+ L GNK DL++ R V  E+A+ +A++ GLFF+ETSA  ATNV   F
Sbjct:   19 KVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAF 171          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.721e-37
Identity = 72/158 (45.57%), Postives = 105/158 (66.46%), Query Frame = 2
Query:   47 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 520
            K +++GD G GKS L+L+F   +F    + TIG  F ++ + ++   +K +IWDTAGQE + S+   YYRGAA A++VYDIT + +F     W+++ +   N NMV+ L GNK+DL   R+V  EE +A+A+E+GL FMETSAKTA+NV + F   AK
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAK 165          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.721e-37
Identity = 72/158 (45.57%), Postives = 105/158 (66.46%), Query Frame = 2
Query:   47 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 520
            K +++GD G GKS L+L+F   +F    + TIG  F ++ + ++   +K +IWDTAGQE + S+   YYRGAA A++VYDIT + +F     W+++ +   N NMV+ L GNK+DL   R+V  EE +A+A+E+GL FMETSAKTA+NV + F   AK
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAK 165          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.721e-37
Identity = 72/158 (45.57%), Postives = 105/158 (66.46%), Query Frame = 2
Query:   47 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 520
            K +++GD G GKS L+L+F   +F    + TIG  F ++ + ++   +K +IWDTAGQE + S+   YYRGAA A++VYDIT + +F     W+++ +   N NMV+ L GNK+DL   R+V  EE +A+A+E+GL FMETSAKTA+NV + F   AK
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAK 165          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RAB2A_MACFA (Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.721e-37
Identity = 72/158 (45.57%), Postives = 105/158 (66.46%), Query Frame = 2
Query:   47 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 520
            K +++GD G GKS L+L+F   +F    + TIG  F ++ + ++   +K +IWDTAGQE + S+   YYRGAA A++VYDIT + +F     W+++ +   N NMV+ L GNK+DL   R+V  EE +A+A+E+GL FMETSAKTA+NV + F   AK
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAK 165          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RAB2A_HUMAN (Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.721e-37
Identity = 72/158 (45.57%), Postives = 105/158 (66.46%), Query Frame = 2
Query:   47 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 520
            K +++GD G GKS L+L+F   +F    + TIG  F ++ + ++   +K +IWDTAGQE + S+   YYRGAA A++VYDIT + +F     W+++ +   N NMV+ L GNK+DL   R+V  EE +A+A+E+GL FMETSAKTA+NV + F   AK
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAK 165          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.721e-37
Identity = 72/158 (45.57%), Postives = 105/158 (66.46%), Query Frame = 2
Query:   47 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 520
            K +++GD G GKS L+L+F   +F    + TIG  F ++ + ++   +K +IWDTAGQE + S+   YYRGAA A++VYDIT + +F     W+++ +   N NMV+ L GNK+DL   R+V  EE +A+A+E+GL FMETSAKTA+NV + F   AK
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAK 165          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RAB2A_CANFA (Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.721e-37
Identity = 72/158 (45.57%), Postives = 105/158 (66.46%), Query Frame = 2
Query:   47 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 520
            K +++GD G GKS L+L+F   +F    + TIG  F ++ + ++   +K +IWDTAGQE + S+   YYRGAA A++VYDIT + +F     W+++ +   N NMV+ L GNK+DL   R+V  EE +A+A+E+GL FMETSAKTA+NV + F   AK
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAK 165          
The following BLAST results are available for this feature:
BLAST of CX286879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RIC2_ORYSJ2.849e-3746.15Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RB2BV_BETVU2.849e-3746.79Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RB11A_LOTJA2.849e-3747.06Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
RAB2A_RABIT3.721e-3745.57Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]
RAB2A_PONAB3.721e-3745.57Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2... [more]
RAB2A_MOUSE3.721e-3745.57Ras-related protein Rab-2A OS=Mus musculus GN=Rab2... [more]
RAB2A_MACFA3.721e-3745.57Ras-related protein Rab-2A OS=Macaca fascicularis ... [more]
RAB2A_HUMAN3.721e-3745.57Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2... [more]
RAB2A_CHICK3.721e-3745.57Ras-related protein Rab-2A OS=Gallus gallus GN=RAB... [more]
RAB2A_CANFA3.721e-3745.57Ras-related protein Rab-2A OS=Canis familiaris GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01002B04Rv Veg1 Citrus clementina cDNA clone C01002B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286879 ID=CX286879; Name=CX286879; organism=Citrus clementina; type=EST; length=521bp
ATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAATGCTAAAT
TGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTGTACTGCGC
TTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATTGGAGCTGC
CTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAAATTTGAGA
TTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTCCAATGTAC
TATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACAAATCAAGC
CTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGCACAAGGCA
ATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACTTGTTGGAT
GCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAGGAAAATGG
CCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCAATGTGAATGACA
TTTTCTATGAAATAGCAAAGA
back to top