CX286879

Overview
NameCX286879
Unique NameCX286879
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length521
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig326 contig Ccv1_Contig326:82..602. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RAB14_PONAB (Ras-related protein Rab-14 OS=Pongo abelii GN=RAB14 PE=2 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 2.412e-36
Identity = 73/158 (46.20%), Postives = 105/158 (66.46%), Query Frame = 2
Query:   47 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 520
            K +++GD+G GKS L+ +F + +F+     TIG  F ++ + V+   +K +IWDTAGQER+ ++   YYRGAA A++VYDIT ++++     W+ + +   NPN V+ L GNKADL   R VT EEA+ +A+ENGL F+E SAKT  NV D F E AK
Sbjct:   13 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK 170          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RAB14_MOUSE (Ras-related protein Rab-14 OS=Mus musculus GN=Rab14 PE=1 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 2.412e-36
Identity = 73/158 (46.20%), Postives = 105/158 (66.46%), Query Frame = 2
Query:   47 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 520
            K +++GD+G GKS L+ +F + +F+     TIG  F ++ + V+   +K +IWDTAGQER+ ++   YYRGAA A++VYDIT ++++     W+ + +   NPN V+ L GNKADL   R VT EEA+ +A+ENGL F+E SAKT  NV D F E AK
Sbjct:   13 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK 170          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RAB14_HUMAN (Ras-related protein Rab-14 OS=Homo sapiens GN=RAB14 PE=1 SV=4)

HSP 1 Score: 151.369 bits (381), Expect = 2.412e-36
Identity = 73/158 (46.20%), Postives = 105/158 (66.46%), Query Frame = 2
Query:   47 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 520
            K +++GD+G GKS L+ +F + +F+     TIG  F ++ + V+   +K +IWDTAGQER+ ++   YYRGAA A++VYDIT ++++     W+ + +   NPN V+ L GNKADL   R VT EEA+ +A+ENGL F+E SAKT  NV D F E AK
Sbjct:   13 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK 170          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RAB14_CHICK (Ras-related protein Rab-14 OS=Gallus gallus GN=RAB14 PE=2 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 2.412e-36
Identity = 73/158 (46.20%), Postives = 105/158 (66.46%), Query Frame = 2
Query:   47 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 520
            K +++GD+G GKS L+ +F + +F+     TIG  F ++ + V+   +K +IWDTAGQER+ ++   YYRGAA A++VYDIT ++++     W+ + +   NPN V+ L GNKADL   R VT EEA+ +A+ENGL F+E SAKT  NV D F E AK
Sbjct:   13 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK 170          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.150e-36
Identity = 71/156 (45.51%), Postives = 107/156 (68.59%), Query Frame = 2
Query:   47 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 514
            K+VL+GD G GKS+++ RF + +F    +STIG  F ++TL V   TVK +IWDTAGQERY ++   YYRGA  A++VYDIT + +F+  ++W++EL+   + N+V+ +AGNK+DL   R V+ ++  A +++ GL F+ETSA  ATN+   F  I
Sbjct:   14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTI 169          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RAB6A_CHICK (Ras-related protein Rab-6A OS=Gallus gallus GN=RAB6A PE=2 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 3.150e-36
Identity = 71/164 (43.29%), Postives = 107/164 (65.24%), Query Frame = 2
Query:   26 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA 517
            GN     KLV LG+   GK+SL+ RF+   F    ++TIG  F S+T+ + D T++ ++WDTAGQER+ SL P Y R +AAA++VYDITN  SF++  KW+ +++ +   ++++ L GNK DL D R+V+ EE +  A+E  + F+ETSAK   NV  +F  +A
Sbjct:    8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 171          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RAB6B_CAEEL (Ras-related protein Rab-6.2 OS=Caenorhabditis elegans GN=rab-6.2 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.114e-36
Identity = 72/168 (42.86%), Postives = 106/168 (63.10%), Query Frame = 2
Query:   14 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA 517
            M+  GN     KLV LG+   GK+SL+ RF+   F    ++TIG  F S+T+ + D TV+ ++WDTAGQER+ SL P Y R +  A++VYDITN  SF +  KW+ +++ +   ++++ L GNK DL D R+VT +E +  A+E  + F+ETSAK   NV  +F  IA
Sbjct:    1 MSDFGNPLKKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNSNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVTTDEGERKAKELNVMFIETSAKAGYNVKQLFRRIA 168          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 5.373e-36
Identity = 72/156 (46.15%), Postives = 105/156 (67.31%), Query Frame = 2
Query:   47 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 514
            K+VL+GD   GKS L+ RF + +F    ++TIG  F ++TL ++  TVK +IWDTAGQERY ++   YYRGA  A++VYDIT + SF+   +W++EL+   + N+V+ L GNK+DL   R V  E+A+ +A+   LFFMETSA  +TNV + F  +
Sbjct:   20 KVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTV 175          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.373e-36
Identity = 71/158 (44.94%), Postives = 103/158 (65.19%), Query Frame = 2
Query:   47 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 520
            K +++GD G GKS L+L+F   +F    + TIG  F ++ + ++   +K +IWDTAGQE + S+   YYRGAA A++VYDIT + +F     W+++ +   + NMV+ L GNK+DL   R V  EE +A+A+E+GL FMETSAKTA NV + F   AK
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAK 165          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RAB14_DICDI (Ras-related protein Rab-14 OS=Dictyostelium discoideum GN=rab14 PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 7.017e-36
Identity = 71/158 (44.94%), Postives = 104/158 (65.82%), Query Frame = 2
Query:   47 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 520
            K +++GD+G GKS L+ +F + +F+     TIG  F ++ + VN+  +K +IWDTAGQER+ ++   YYRGAA A++VYDIT + ++     W+ + +   NPN V+ L GNK DL   R VT EEA A+A++NGL F+E+SAKT  NV + F   AK
Sbjct:   10 KYIIIGDMGVGKSCLLHQFTENKFVPDSPHTIGVEFGTRIVDVNNKKIKLQIWDTAGQERFRAVTRSYYRGAAGALLVYDITRRITYNHLTTWLTDARNLTNPNTVIMLIGNKKDLEGQRDVTYEEASAFAKQNGLIFVESSAKTGENVEEAFLRTAK 167          
The following BLAST results are available for this feature:
BLAST of CX286879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB14_PONAB2.412e-3646.20Ras-related protein Rab-14 OS=Pongo abelii GN=RAB1... [more]
RAB14_MOUSE2.412e-3646.20Ras-related protein Rab-14 OS=Mus musculus GN=Rab1... [more]
RAB14_HUMAN2.412e-3646.20Ras-related protein Rab-14 OS=Homo sapiens GN=RAB1... [more]
RAB14_CHICK2.412e-3646.20Ras-related protein Rab-14 OS=Gallus gallus GN=RAB... [more]
RB11C_LOTJA3.150e-3645.51Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RAB6A_CHICK3.150e-3643.29Ras-related protein Rab-6A OS=Gallus gallus GN=RAB... [more]
RAB6B_CAEEL4.114e-3642.86Ras-related protein Rab-6.2 OS=Caenorhabditis eleg... [more]
RGP1_ORYSJ5.373e-3646.15Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
RAB2B_HUMAN5.373e-3644.94Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
RAB14_DICDI7.017e-3644.94Ras-related protein Rab-14 OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionC01002B04Rv Veg1 Citrus clementina cDNA clone C01002B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286879 ID=CX286879; Name=CX286879; organism=Citrus clementina; type=EST; length=521bp
ATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAATGCTAAAT
TGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTGTACTGCGC
TTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATTGGAGCTGC
CTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAAATTTGAGA
TTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTCCAATGTAC
TATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACAAATCAAGC
CTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGCACAAGGCA
ATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACTTGTTGGAT
GCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAGGAAAATGG
CCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCAATGTGAATGACA
TTTTCTATGAAATAGCAAAGA
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