CX286880

Overview
NameCX286880
Unique NameCX286880
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length508
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig17 contig Ccv1_Contig17:350..857. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286880 vs. ExPASy Swiss-Prot
Match: ACSF1_THEEB (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 1 OS=Thermosynechococcus elongatus (strain BP-1) GN=acsF1 PE=3 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 1.503e-64
Identity = 116/169 (68.64%), Postives = 143/169 (84.62%), Query Frame = 2
Query:    2 TLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 508
            T+LTPRFYTTDF+ M  +  TE     N+AE EA+L+EF+ DYN+ HFVR++EF+++ D + G  R++F+EFLERSCTAEFSGFLLYKEL RRLK  NP++AE F+LMSRDEARHAGFLNK ++DFN +LDLGFLT+ R YT+F+P+FIFYATYLSEKIGYWRYITIYR
Sbjct:   24 TILTPRFYTTDFEAMANMDITE-----NKAELEAILEEFRCDYNRHHFVRDEEFEQSWDHIDGETRRLFIEFLERSCTAEFSGFLLYKELSRRLKDRNPLLAECFALMSRDEARHAGFLNKAMADFNLSLDLGFLTQHRSYTYFEPEFIFYATYLSEKIGYWRYITIYR 187          
BLAST of CX286880 vs. ExPASy Swiss-Prot
Match: ACSF_PORYE (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Porphyra yezoensis GN=acsF PE=3 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 4.372e-64
Identity = 117/169 (69.23%), Postives = 139/169 (82.25%), Query Frame = 2
Query:    2 TLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 508
            TLLTPRFYTTDF+EM    N +I+   NQ +F A+L+EF+ DYN  HF+R++EF ++   ++   + +F+EFLERSCTAEFSGFLLYKEL R+LK  NPV+AE F LMSRDEARHAGFLNK + DFN +LDLGFLTK+RKYTFF PKFIFYATYLSEKIGYWRYITIYR
Sbjct:   15 TLLTPRFYTTDFEEMA---NMDISG--NQEDFLAILEEFRADYNSEHFIRDEEFNQSWSNLEHKTKSLFIEFLERSCTAEFSGFLLYKELSRKLKDRNPVIAECFLLMSRDEARHAGFLNKAIGDFNLSLDLGFLTKSRKYTFFSPKFIFYATYLSEKIGYWRYITIYR 178          
BLAST of CX286880 vs. ExPASy Swiss-Prot
Match: ACSF_PORPU (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Porphyra purpurea GN=acsF PE=3 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 4.372e-64
Identity = 114/169 (67.46%), Postives = 138/169 (81.66%), Query Frame = 2
Query:    2 TLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 508
            TLLTPRFYTTDF+EM ++  +E     N+ +F A+L+EF+ DYN  HF+R +EF ++   ++   + +F+EFLERSCTAEFSGFLLYKEL R+LK +NP++AE F LMSRDEARHAGFLNK + DFN +LDLGFLTK RKYTFF PKFIFYATYLSEKIGYWRYITIYR
Sbjct:   15 TLLTPRFYTTDFEEMASMNISE-----NEQDFFAILEEFRADYNSQHFIRGEEFNQSWSNLETKTKSLFIEFLERSCTAEFSGFLLYKELSRKLKDSNPIIAECFLLMSRDEARHAGFLNKAIGDFNLSLDLGFLTKTRKYTFFSPKFIFYATYLSEKIGYWRYITIYR 178          
BLAST of CX286880 vs. ExPASy Swiss-Prot
Match: ACSF_CYAME (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Cyanidioschyzon merolae GN=acsF PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 6.313e-63
Identity = 120/169 (71.01%), Postives = 137/169 (81.07%), Query Frame = 2
Query:    2 TLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 508
            TLLTPRFYTTDFD+M      +I+K  N+AE EA++ EF+ DYNQTHF+R+ EF +   +M    RQ F EFLERSCTAEFSGFLLYKEL RRLK TNP++AE F  MSRDEARHAGFLNK ++DF  +LDLGFLTK R+YTFF PKFIFYATYLSEKIGYWRYITIYR
Sbjct:   13 TLLTPRFYTTDFDQMAKY---DISK--NRAEIEAIVNEFRKDYNQTHFIRDDEFDQVWTQMPESKRQWFKEFLERSCTAEFSGFLLYKELSRRLKDTNPLLAEGFGYMSRDEARHAGFLNKAMADFGVSLDLGFLTKHRQYTFFAPKFIFYATYLSEKIGYWRYITIYR 176          
BLAST of CX286880 vs. ExPASy Swiss-Prot
Match: ACSF_SYNS3 (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Synechococcus sp. (strain CC9311) GN=acsF PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 5.344e-62
Identity = 113/169 (66.86%), Postives = 137/169 (81.07%), Query Frame = 2
Query:    2 TLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 508
            T+LTPRFYTTDF+ M  +     + + N+AE EA+ +EF+ DYN+ HFVRN EF  AAD++    R++FVEFLE+SCT+EFSGFLLYKEL RR+K  NP++AE FS M+RDEARHAGFLNK +SDF   LDLGFLT ++ YTFFKPKFIFYATYLSEKIGYWRYITI+R
Sbjct:   26 TILTPRFYTTDFEAMAAM-----DLRPNEAELEAICEEFRKDYNRHHFVRNGEFDGAADQLDPETRKVFVEFLEQSCTSEFSGFLLYKELSRRIKTKNPLLAECFSHMARDEARHAGFLNKSMSDFGLQLDLGFLTSSKSYTFFKPKFIFYATYLSEKIGYWRYITIFR 189          
BLAST of CX286880 vs. ExPASy Swiss-Prot
Match: ACSF_SYNSC (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Synechococcus sp. (strain CC9605) GN=acsF PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 9.116e-62
Identity = 112/169 (66.27%), Postives = 137/169 (81.07%), Query Frame = 2
Query:    2 TLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 508
            T+LTPRFYTTDF+ M  +     + + N+AE EA+ +EF+ DYN+ HFVRN+EF+ AADK+    R++F+EFLE+SCT+EFSGFLLYKEL RR+K  NP++AE F+ M+RDEARHAGFLNK +SDF   LDLGFLT  + YTFFKPKFIFYATYLSEKIGYWRYI IYR
Sbjct:   22 TILTPRFYTTDFEAMAAM-----DLQPNEAELEAICEEFRKDYNRHHFVRNEEFEGAADKLDPETRKVFIEFLEQSCTSEFSGFLLYKELSRRIKAKNPLLAECFAHMARDEARHAGFLNKSMSDFGMQLDLGFLTANKDYTFFKPKFIFYATYLSEKIGYWRYIAIYR 185          
BLAST of CX286880 vs. ExPASy Swiss-Prot
Match: ACSF_SYNPX (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Synechococcus sp. (strain WH8102) GN=acsF PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 9.116e-62
Identity = 112/169 (66.27%), Postives = 137/169 (81.07%), Query Frame = 2
Query:    2 TLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 508
            T+LTPRFYTTDFD+M  +     + + N+AE EA+ +EF+ DYN+ HFVRN +F  AADK+    R++FVEFLE+SCT+EFSGFLLYKEL RR+K+ NP++AE F+ M+RDEARHAGFLNK +SDF   LDLGFLT  + YTFF+PKFIFYATYLSEKIGYWRYI IYR
Sbjct:   22 TILTPRFYTTDFDDMAAM-----DLRPNEAELEAICEEFRKDYNRHHFVRNDDFDGAADKLDPETRRVFVEFLEQSCTSEFSGFLLYKELSRRIKQQNPLLAECFAHMARDEARHAGFLNKAMSDFGMQLDLGFLTANKDYTFFQPKFIFYATYLSEKIGYWRYIAIYR 185          
BLAST of CX286880 vs. ExPASy Swiss-Prot
Match: ACSF_SYNPW (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Synechococcus sp. (strain WH7803) GN=acsF PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 1.555e-61
Identity = 112/169 (66.27%), Postives = 137/169 (81.07%), Query Frame = 2
Query:    2 TLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 508
            T+LTPRFYTTDF+ M  +     + + N+AE EA+ +EF+ DYN+ HFVRN EF+ AADK+    R++FVEFLE+SCT+EFSGFLLYKEL RR+K  NP++AE F+ M+RDEARHAGFLNK +SDF   LDLGFLT  + YTFF+PKFIFYATYLSEKIGYWRYITI+R
Sbjct:   26 TILTPRFYTTDFEAMAAM-----DLRPNEAELEAICEEFRKDYNRHHFVRNDEFEGAADKLDPETRRVFVEFLEQSCTSEFSGFLLYKELSRRIKTRNPLLAECFAHMARDEARHAGFLNKSMSDFGLQLDLGFLTANKSYTFFQPKFIFYATYLSEKIGYWRYITIFR 189          
BLAST of CX286880 vs. ExPASy Swiss-Prot
Match: ACSF_CYACA (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Cyanidium caldarium GN=acsF PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 7.717e-61
Identity = 113/169 (66.86%), Postives = 135/169 (79.88%), Query Frame = 2
Query:    2 TLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 508
            TLL PRFYTTDFDE+     +  +   N  E EA++ EF++DYN+ HF+R++EF     ++    +Q+FVEFLERSCTAEFSGFLLYKEL R+LK+  PV+AE F LMSRDEARHAGFLNK ++DFN  LDLGF+TK R+YTFFKPKFIFYATYLSEKIGYWRYITIYR
Sbjct:   17 TLLAPRFYTTDFDEI-----SRYDISSNFEEIEAIVNEFRSDYNKKHFIRDEEFDRHWSQIDAQTKQMFVEFLERSCTAEFSGFLLYKELARKLKEKMPVLAEGFLLMSRDEARHAGFLNKAMADFNLTLDLGFMTKNRRYTFFKPKFIFYATYLSEKIGYWRYITIYR 180          
BLAST of CX286880 vs. ExPASy Swiss-Prot
Match: ACSF_SYNR3 (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Synechococcus sp. (strain RCC307) GN=acsF PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 1.316e-60
Identity = 111/169 (65.68%), Postives = 134/169 (79.29%), Query Frame = 2
Query:    2 TLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 508
            T+LTPRFYTTDF+ M  +     + + NQ E EA+ +EF+ DYN+ HFVRN+ F  AADK+    R++FVEFLE+SCT+EFSGFLLYKEL RR+K+ NP++AE F+ M+RDEARHAGFLNK + DF   LDLGFLT  + YTFFKPKFIFYATYLSEKIGYWRYI IYR
Sbjct:   26 TILTPRFYTTDFEAMAAM-----DLRPNQEELEAICEEFRKDYNRHHFVRNEAFDGAADKLDPETRRVFVEFLEQSCTSEFSGFLLYKELSRRIKQKNPLLAECFAHMARDEARHAGFLNKAMGDFGVQLDLGFLTANKAYTFFKPKFIFYATYLSEKIGYWRYIAIYR 189          
The following BLAST results are available for this feature:
BLAST of CX286880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
ACSF1_THEEB1.503e-6468.64Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_PORYE4.372e-6469.23Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_PORPU4.372e-6467.46Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_CYAME6.313e-6371.01Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_SYNS35.344e-6266.86Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_SYNSC9.116e-6266.27Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_SYNPX9.116e-6266.27Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_SYNPW1.555e-6166.27Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_CYACA7.717e-6166.86Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_SYNR31.316e-6065.68Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]

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Properties
Property NameValue
Genbank descriptionC01002B05Rv Veg1 Citrus clementina cDNA clone C01002B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286880 ID=CX286880; Name=CX286880; organism=Citrus clementina; type=EST; length=508bp
GACCCTTCTGACACCAAGGTTTTATACAACAGATTTTGATGAAATGGAGA
CCCTTTTCAACACTGAGATCAACAAGAAGCTCAACCAGGCTGAATTTGAG
GCATTGCTTCAAGAATTCAAGACTGATTATAACCAGACTCACTTTGTGAG
GAACAAGGAGTTCAAGGAAGCTGCTGACAAGATGCAAGGCCCTCTCAGGC
AGATCTTTGTTGAGTTCTTGGAGAGGTCTTGCACTGCTGAGTTCTCTGGT
TTCCTTCTTTACAAAGAGCTCGGAAGGAGACTCAAGAAAACCAACCCAGT
GGTAGCTGAGATTTTCTCTCTGATGTCCAGGGATGAAGCCAGGCATGCCG
GGTTTCTGAACAAGGGGCTATCTGATTTCAATTATGCATTGGACTTGGGC
TTCCTGACAAAAGCTAGGAAATACACATTTTTCAAGCCAAAGTTTATCTT
TTATGCCACATATTTATCTGAGAAGATTGGATACTGGAGATACATTACCA
TATACAGA
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