CX286880

Overview
NameCX286880
Unique NameCX286880
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length508
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig17 contig Ccv1_Contig17:350..857. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286880 vs. ExPASy Swiss-Prot
Match: ACSF_PROM4 (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Prochlorococcus marinus (strain MIT 9211) GN=acsF PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 7.527e-32
Identity = 71/169 (42.01%), Postives = 102/169 (60.36%), Query Frame = 2
Query:    5 LLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTN-PVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 508
            LLTPRFYTT+FD+       + + ++ + +F+A+  E + DYN  HF R        +++    + ++  +L RS  +EFSGFLL+KE+  R KK   P + + F  ++RDEARHAGFL + L +    +DL  L K R  TFF   ++ Y+ YLSEKIGYWRYI I R
Sbjct:   27 LLTPRFYTTEFDKA-----AKTDLEIARRDFQAMFNEMEADYNLKHFDRKASLARL-NELSPKDKSVYESYLVRSVVSEFSGFLLFKEISNRFKKAKRPELGQFFQFLARDEARHAGFLGRALKEEGINIDLPNLPKKRAATFFPLSWVLYSLYLSEKIGYWRYILINR 189          
BLAST of CX286880 vs. ExPASy Swiss-Prot
Match: ACSF_PROMA (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Prochlorococcus marinus GN=acsF PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 9.830e-32
Identity = 76/169 (44.97%), Postives = 104/169 (61.54%), Query Frame = 2
Query:    5 LLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTN-PVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 508
            LLTPRFYTT+F++     + EI +K    +FEA+ +E + DYN  HF R K   E  D++    + ++  +L RS  +EFSGFLL+KE+  R KK     + + F+ ++RDEARHAGFL + L      +DL  L K R  TFF   ++ Y+ YLSEKIGYWRYI I R
Sbjct:   25 LLTPRFYTTEFEKAAKT-DLEIARK----DFEAMFKEMEADYNLKHFDR-KASLERLDELSPEDKAVYESYLVRSVVSEFSGFLLFKEISNRFKKAGRQELGQFFTFLARDEARHAGFLGRALKTEGINVDLPNLPKKRAATFFPLSWVLYSLYLSEKIGYWRYILINR 187          
BLAST of CX286880 vs. ExPASy Swiss-Prot
Match: ACSF_PROM3 (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Prochlorococcus marinus (strain MIT 9303) GN=acsF PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.879e-31
Identity = 74/169 (43.79%), Postives = 103/169 (60.95%), Query Frame = 2
Query:    5 LLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTN-PVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 508
            LLTPRFYTT+FD+      T+++  + + +FEA+ +E + DYN  HF R    +  AD +    + I+  +L RS  +EFSGFLL+KE+  R KK     + + F+ ++RDEARHAGFL + L      +DL  L   R  TFF   ++ Y+ YLSEKIGYWRYI I R
Sbjct:   27 LLTPRFYTTEFDKAA---KTDLD--IARKDFEAMFKEMEADYNLKHFDRKASLERLAD-LSPEDKAIYESYLVRSVVSEFSGFLLFKEISNRFKKAGRQELGQFFTFLARDEARHAGFLGRALKAEGINVDLPNLGNKRAPTFFPLSWVLYSLYLSEKIGYWRYILINR 189          
BLAST of CX286880 vs. ExPASy Swiss-Prot
Match: ACSF_PROMM (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Prochlorococcus marinus (strain MIT 9313) GN=acsF PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.420e-30
Identity = 74/169 (43.79%), Postives = 103/169 (60.95%), Query Frame = 2
Query:    5 LLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTN-PVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 508
            LLTPRFYTT+FD+      T+++  + + +FEA+ +E + DYN  HF R K   E   ++    + I+  +L RS  +EFSGFLL+KE+  R KK     + + F+ ++RDEARHAGFL + L      +DL  L   R  TFF   ++ Y+ YLSEKIGYWRYI I R
Sbjct:   27 LLTPRFYTTEFDKAA---KTDLD--IARKDFEAMFKEMEADYNLKHFDR-KASLERLSELSPEDKAIYESYLVRSVVSEFSGFLLFKEISNRFKKAGRQELGQFFTFLARDEARHAGFLGRALKAEGINVDLPNLGNKRAATFFPLSWVLYSLYLSEKIGYWRYILINR 189          
The following BLAST results are available for this feature:
BLAST of CX286880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
ACSF_PROM47.527e-3242.01Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_PROMA9.830e-3244.97Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_PROM34.879e-3143.79Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_PROMM1.420e-3043.79Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01002B05Rv Veg1 Citrus clementina cDNA clone C01002B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286880 ID=CX286880; Name=CX286880; organism=Citrus clementina; type=EST; length=508bp
GACCCTTCTGACACCAAGGTTTTATACAACAGATTTTGATGAAATGGAGA
CCCTTTTCAACACTGAGATCAACAAGAAGCTCAACCAGGCTGAATTTGAG
GCATTGCTTCAAGAATTCAAGACTGATTATAACCAGACTCACTTTGTGAG
GAACAAGGAGTTCAAGGAAGCTGCTGACAAGATGCAAGGCCCTCTCAGGC
AGATCTTTGTTGAGTTCTTGGAGAGGTCTTGCACTGCTGAGTTCTCTGGT
TTCCTTCTTTACAAAGAGCTCGGAAGGAGACTCAAGAAAACCAACCCAGT
GGTAGCTGAGATTTTCTCTCTGATGTCCAGGGATGAAGCCAGGCATGCCG
GGTTTCTGAACAAGGGGCTATCTGATTTCAATTATGCATTGGACTTGGGC
TTCCTGACAAAAGCTAGGAAATACACATTTTTCAAGCCAAAGTTTATCTT
TTATGCCACATATTTATCTGAGAAGATTGGATACTGGAGATACATTACCA
TATACAGA
back to top