CX286881

Overview
NameCX286881
Unique NameCX286881
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length470
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 5.259e-23
Identity = 60/129 (46.51%), Postives = 77/129 (59.69%), Query Frame = 2
Query:   83 DPNLSFLQPMESEFPVIKSEPDSPTFCEIIKPEPLDITCLGSSNWTESPQKRSEPKLADTEER-KHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGA 466
            +P+ S      S FP +K E  +P     +   P+              +K S    A T  + KHYRGVR+RPWGK+AAEIRDPA+ G+RVWLGTF++  DAA AYD AAFRMRG +A+LNFPL   +
Sbjct:   96 EPSSSSSDEDRSSFPSVKIE--TPESFAAVDSVPV------------KKEKTSPVSAAVTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRVNS 210          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: PTI5_SOLLC (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 9.918e-22
Identity = 48/62 (77.42%), Postives = 53/62 (85.48%), Query Frame = 2
Query:  272 KHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLE 457
            K YRGVRRRPWGKYAAEIRD AR G+RVWLGTF++  +AA AYD AAFRMRG KA+LNFP E
Sbjct:   57 KKYRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFPSE 118          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 9.918e-22
Identity = 54/111 (48.65%), Postives = 72/111 (64.86%), Query Frame = 2
Query:  131 IKSEPDSPTFCEIIKPEPLDITCLGSSNWTESPQKRSEPKLADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAG 463
            IK+EP      E I+P  + +  +     T + Q       A   + +HYRGVR+RPWGK+AAEIRDPA+ G+RVWLGT+++  +AA AYD AA+RMRG KA+LNFP   G
Sbjct:   62 IKAEPR-----EEIEPATIPVPSVAPPAETTTAQ-------AVVPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRIG 160          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.295e-21
Identity = 46/80 (57.50%), Postives = 60/80 (75.00%), Query Frame = 2
Query:  224 SPQKRSEPKLADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAG 463
            +P   +    A   + +HYRGVR+RPWGK+AAEIRDPA+ G+RVWLGT+++  +AA AYD AA+RMRG KA+LNFP   G
Sbjct:   85 APPAETTTAQAVVPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRIG 164          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.209e-21
Identity = 45/64 (70.31%), Postives = 54/64 (84.38%), Query Frame = 2
Query:  272 KHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAG 463
            +HYRGVR+RPWGK+AAEIRDPA+ G+RVWLGT++S  +AA AY  AAFRMRG KA+LNFP   G
Sbjct:  105 RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNFPHRIG 168          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF95_ARATH (Ethylene-responsive transcription factor ERF095 OS=Arabidopsis thaliana GN=ERF095 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.886e-21
Identity = 49/67 (73.13%), Postives = 57/67 (85.07%), Query Frame = 2
Query:  257 DTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLE 457
            +T E K YRGVR+RPWGKYAAEIRD AR G+RVWLGTF++  DAA+AYD AAF MRG++AILNFP E
Sbjct:    8 NTNEMK-YRGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQRAILNFPHE 73          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF97_ARATH (Ethylene-responsive transcription factor 14 OS=Arabidopsis thaliana GN=ERF14 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.097e-20
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 2
Query:  266 ERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLE 457
            E+  YRGVRRRPWGKYAAEIRD  + G RVWLGTFD+  DAA+AYD AA+ MRG+ AILNFP E
Sbjct:   16 EQGKYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEDAARAYDRAAYSMRGKAAILNFPHE 79          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF98_ARATH (Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana GN=ERF098 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.432e-20
Identity = 44/74 (59.46%), Postives = 58/74 (78.38%), Query Frame = 2
Query:  236 RSEPKLADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLE 457
            RS    +  +++  +RGVRRRPWGK+AAEIRDP+R G+R+WLGTF++  +AA+AYD AAF +RG  AILNFP E
Sbjct:    6 RSSNNQSQDDKQARFRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILNFPNE 79          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF94_ARATH (Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.870e-20
Identity = 46/76 (60.53%), Postives = 56/76 (73.68%), Query Frame = 2
Query:  230 QKRSEPKLADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLE 457
            ++  E  +A  EE K YRGVR+RPWGK+AAEIRD  RKG RVWLGTFD+   AA AYD AAF ++G  A+LNFP +
Sbjct:   66 EEGKEATVAAEEEEKSYRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNFPAD 141          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 2.443e-20
Identity = 49/95 (51.58%), Postives = 61/95 (64.21%), Query Frame = 2
Query:  206 SSNWTES-------------PQKRSEPKLADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 451
            SS WT S             P  ++    A  ++   YRGVRRRPWGK+AAEIRDP + G+RVWLGT+++  DAA AYD AAF++RG KA LNFP
Sbjct:   55 SSGWTPSVPPVTSPAEENKPPATKASGSHAPRQKGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFP 149          
The following BLAST results are available for this feature:
BLAST of CX286881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
EF100_ARATH5.259e-2346.51Ethylene-responsive transcription factor 1A OS=Ara... [more]
PTI5_SOLLC9.918e-2277.42Pathogenesis-related genes transcriptional activat... [more]
ERF2_TOBAC9.918e-2248.65Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF2_NICSY1.295e-2157.50Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF1_SOLLC2.209e-2170.31Ethylene-responsive transcription factor 1 OS=Sola... [more]
ERF95_ARATH2.886e-2173.13Ethylene-responsive transcription factor ERF095 OS... [more]
ERF97_ARATH1.097e-2071.88Ethylene-responsive transcription factor 14 OS=Ara... [more]
ERF98_ARATH1.432e-2059.46Ethylene-responsive transcription factor ERF098 OS... [more]
ERF94_ARATH1.870e-2060.53Ethylene-responsive transcription factor ERF094 OS... [more]
ERF99_ARATH2.443e-2051.58Ethylene-responsive transcription factor 13 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC01002B06Rv Veg1 Citrus clementina cDNA clone C01002B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286881 ID=CX286881; Name=CX286881; organism=Citrus clementina; type=EST; length=470bp
CAACATGACAACGTTGGAAGAAGAATCATCCATCCTGGAATTCATTCGCC
AGTTTCTTCTCGGAGACTTTACCTCCTTAGACGACCCAAATCTCTCTTTT
CTCCAGCCTATGGAGTCAGAATTCCCTGTGATCAAATCCGAACCCGACTC
CCCCACCTTTTGTGAAATAATAAAACCTGAACCATTGGACATAACGTGTT
TGGGTTCCAGTAATTGGACAGAATCACCTCAAAAGCGTTCGGAGCCGAAG
CTGGCGGACACTGAAGAGAGGAAGCATTACAGGGGAGTAAGAAGAAGGCC
GTGGGGCAAGTATGCGGCTGAAATCCGGGACCCGGCAAGAAAGGGCAGCA
GGGTTTGGTTGGGAACTTTTGATAGTGATGTTGATGCTGCTAAAGCTTAT
GATTCTGCTGCCTTCCGGATGAGGGGTCGCAAAGCAATCTTGAATTTCCC
TCTGGAGGCTGGAGCTGATA
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