CX286881

Overview
NameCX286881
Unique NameCX286881
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length470
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.986e-18
Identity = 44/100 (44.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:  170 IKPEPLDITCLGSSNWTESPQKRSEPKLADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGAD 469
            +K    +I  + S+      ++RS    +D   RK +RGVR+RPWG++AAEIRDP R G RVWLGT+D+  +AA  YD AA +++G  A+ NFP+   A+
Sbjct:   62 VKRHVTEINLMPSTKSIGDRKRRSVSPDSDVTRRKKFRGVRQRPWGRWAAEIRDPTR-GKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNFPVSTTAE 160          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.986e-18
Identity = 42/65 (64.62%), Postives = 52/65 (80.00%), Query Frame = 2
Query:  257 DTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 451
            D   R+HYRGVR+RPWGK+AAEIRDP +K +RVWLGTF++  +AA AYD AA + +G KA LNFP
Sbjct:   32 DQPRRRHYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFP 95          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.900e-18
Identity = 43/63 (68.25%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  263 EERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 451
            + R+ YRGVR+RPWGK+AAEIRDP  K +RVWLGTFD+   AA+AYD AA R RG KA LNFP
Sbjct:  180 QPRRRYRGVRQRPWGKWAAEIRDPF-KAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFP 241          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF77_ARATH (Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.094e-18
Identity = 42/59 (71.19%), Postives = 49/59 (83.05%), Query Frame = 2
Query:  278 YRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPL 454
            YRGVRRRPWG+YAAEIRDP +K  RVWLG+F++  +AA+AYDSAA R RG KA  NFPL
Sbjct:   53 YRGVRRRPWGRYAAEIRDPVKK-KRVWLGSFNTGEEAARAYDSAAIRFRGSKATTNFPL 110          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 6.652e-18
Identity = 44/67 (65.67%), Postives = 51/67 (76.12%), Query Frame = 2
Query:  263 EERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAG 463
            E  K YRGVR+RPWGK+AAEIRDP  K +RVWLGTF++   AA+AYD+AA R RG KA LNFP   G
Sbjct:   56 ERPKKYRGVRQRPWGKWAAEIRDP-HKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFPENVG 121          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.652e-18
Identity = 42/68 (61.76%), Postives = 55/68 (80.88%), Query Frame = 2
Query:  248 KLADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 451
            K A  + +  +RG+R+RPWGK+AAEIRDP RKG RVWLGTF+S  +AA+AYD+ A R+RG+KA +NFP
Sbjct:  110 KSAKRKRKNQFRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFP 176          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.652e-18
Identity = 44/79 (55.70%), Postives = 57/79 (72.15%), Query Frame = 2
Query:  221 ESPQKRSEPKLADTEE--RKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 451
            + P ++  P   D  +  R+HYRGVR+RPWGK+AAEIRDP +K +RVWLGTF++   AA AYD AA + +G KA LNFP
Sbjct:   69 QDPNQQVAPTHQDQGDLRRRHYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFP 146          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 8.688e-18
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 2
Query:  269 RKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 451
            +++YRGVR+RPWGK+AAEIRDP  K +RVWLGTFD+  +AA AYD AAF  RG KA LNFP
Sbjct:   67 QRNYRGVRQRPWGKWAAEIRDP-NKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFP 126          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.135e-17
Identity = 41/60 (68.33%), Postives = 50/60 (83.33%), Query Frame = 2
Query:  275 HYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPL 454
            H+RGVR+RPWG+YAAEIRDP +K +RVWLGTFD+  +AA+AYD+AA   RG KA  NFPL
Sbjct:   32 HFRGVRKRPWGRYAAEIRDPGKK-TRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFPL 90          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF3_TOBAC (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.302e-17
Identity = 43/71 (60.56%), Postives = 54/71 (76.06%), Query Frame = 2
Query:  242 EPKLADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPL 454
            EP  +   +   +RGVR+RPWG++AAEIRDP +K +RVWLGTFDS  DAA+AYD+AA  +RG KA  NFPL
Sbjct:   16 EPNGSGGSKEIRFRGVRKRPWGRFAAEIRDPWKK-TRVWLGTFDSAEDAARAYDAAARALRGPKAKTNFPL 85          
The following BLAST results are available for this feature:
BLAST of CX286881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
PTI6_SOLLC2.986e-1844.00Pathogenesis-related genes transcriptional activat... [more]
EF113_ARATH2.986e-1864.62Ethylene-responsive transcription factor ERF113 OS... [more]
ABR1_ARATH3.900e-1868.25Ethylene-responsive transcription factor ABR1 OS=A... [more]
ERF77_ARATH5.094e-1871.19Ethylene-responsive transcription factor 10 OS=Ara... [more]
RAP26_ARATH6.652e-1865.67Ethylene-responsive transcription factor RAP2-6 OS... [more]
ERF1_ORYSJ6.652e-1861.76Ethylene-responsive transcription factor 1 OS=Oryz... [more]
EF114_ARATH6.652e-1855.70Ethylene-responsive transcription factor ERF114 OS... [more]
EF112_ARATH8.688e-1868.85Ethylene-responsive transcription factor ERF112 OS... [more]
ERF80_ARATH1.135e-1768.33Ethylene-responsive transcription factor 9 OS=Arab... [more]
ERF3_TOBAC3.302e-1760.56Ethylene-responsive transcription factor 3 OS=Nico... [more]

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Properties
Property NameValue
Genbank descriptionC01002B06Rv Veg1 Citrus clementina cDNA clone C01002B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286881 ID=CX286881; Name=CX286881; organism=Citrus clementina; type=EST; length=470bp
CAACATGACAACGTTGGAAGAAGAATCATCCATCCTGGAATTCATTCGCC
AGTTTCTTCTCGGAGACTTTACCTCCTTAGACGACCCAAATCTCTCTTTT
CTCCAGCCTATGGAGTCAGAATTCCCTGTGATCAAATCCGAACCCGACTC
CCCCACCTTTTGTGAAATAATAAAACCTGAACCATTGGACATAACGTGTT
TGGGTTCCAGTAATTGGACAGAATCACCTCAAAAGCGTTCGGAGCCGAAG
CTGGCGGACACTGAAGAGAGGAAGCATTACAGGGGAGTAAGAAGAAGGCC
GTGGGGCAAGTATGCGGCTGAAATCCGGGACCCGGCAAGAAAGGGCAGCA
GGGTTTGGTTGGGAACTTTTGATAGTGATGTTGATGCTGCTAAAGCTTAT
GATTCTGCTGCCTTCCGGATGAGGGGTCGCAAAGCAATCTTGAATTTCCC
TCTGGAGGCTGGAGCTGATA
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