CX286881

Overview
NameCX286881
Unique NameCX286881
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length470
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.302e-17
Identity = 41/64 (64.06%), Postives = 52/64 (81.25%), Query Frame = 2
Query:  269 RKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEA 460
            ++HYRGVR+RPWGK+AAEIRDP +K +RVWLGTF++   AA AYD+AA + +G KA LNFP  A
Sbjct:   89 KRHYRGVRQRPWGKWAAEIRDP-QKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNFPERA 151          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 5.632e-17
Identity = 45/78 (57.69%), Postives = 58/78 (74.36%), Query Frame = 2
Query:  221 ESPQKRSEPKLADTEERKH-YRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 451
            E+ +K    +     +RK+ YRG+R+RPWGK+AAEIRDP RKG RVWLGTF++  +AA AYD AA ++RG KA LNFP
Sbjct:   59 EAVKKEQATEPGKRRKRKNVYRGIRKRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFP 135          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF82_ARATH (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.632e-17
Identity = 40/63 (63.49%), Postives = 53/63 (84.13%), Query Frame = 2
Query:  278 YRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGA 466
            +RGVR+RPWG++AAEIRDP +K +RVWLGTFDS  +AA+AYDSAA  +RG KA  NFP+++ +
Sbjct:   28 FRGVRKRPWGRFAAEIRDPWKK-ARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNFPIDSSS 89          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.255e-16
Identity = 42/65 (64.62%), Postives = 49/65 (75.38%), Query Frame = 2
Query:  275 HYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGAD 469
            HYRGVR+RPWG+YAAEIRDP +K +RVWLGTFD+  +AA AYD AA  +RG KA  NFP     D
Sbjct:   11 HYRGVRKRPWGRYAAEIRDPWKK-TRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFPSPLSLD 74          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.255e-16
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 2
Query:  278 YRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 451
            YRGVR+RPWG+YAAEIRDP +K SRVWLGTFD+  +AA+AYD  A   RG KA  NFP
Sbjct:   20 YRGVRKRPWGRYAAEIRDPFKK-SRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFP 76          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.639e-16
Identity = 40/58 (68.97%), Postives = 48/58 (82.76%), Query Frame = 2
Query:  278 YRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 451
            YRGVR+RPWG+YAAEIRDP +K +RVWLGTFD+  +AA+AYD+AA   RG KA  NFP
Sbjct:   25 YRGVRKRPWGRYAAEIRDPGKK-TRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFP 81          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.140e-16
Identity = 40/66 (60.61%), Postives = 52/66 (78.79%), Query Frame = 2
Query:  263 EERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEA 460
            ++   Y+G+RRRPWG++AAEIRDP  KG RVWLGTF++  +AA+AYD  A R+RG KA LNFP E+
Sbjct:   20 KQSSRYKGIRRRPWGRWAAEIRDPI-KGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFPNES 84          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.795e-16
Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = 2
Query:  266 ERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 451
            ++  YRGVR+RPWGK+AAEIRDP R  +RVWLGTF++  DAA+AYD AA   RG +A LNFP
Sbjct:  132 KKNGYRGVRQRPWGKFAAEIRDPKR-ATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFP 192          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: CRF3_ARATH (Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.650e-16
Identity = 42/86 (48.84%), Postives = 63/86 (73.26%), Query Frame = 2
Query:  206 SSNWTESP---QKRSEPKLADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPL 454
            SS+ T+SP   ++R   K++ + + K +RGVR+RPWGK+AAEIRDP ++  R+WLGTF++  +AA  YD+AA R+RG  A+ NF +
Sbjct:   98 SSDETQSPASSRQRPNNKVSVSGQIKKFRGVRQRPWGKWAAEIRDPEQR-RRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNFSI 182          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF91_ARATH (Ethylene-responsive transcription factor ERF091 OS=Arabidopsis thaliana GN=ERF091 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.767e-16
Identity = 41/63 (65.08%), Postives = 48/63 (76.19%), Query Frame = 2
Query:  272 KHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRG-RKAILNFPLE 457
            + YRGVR+RPWGK+AAEIRD  R G RVWLGTF +  +AA AYD AA R+RG +KA  NF LE
Sbjct:  108 RKYRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFQTAEEAAMAYDKAAVRIRGTQKAHTNFQLE 170          
The following BLAST results are available for this feature:
BLAST of CX286881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
EF115_ARATH3.302e-1764.06Ethylene-responsive transcription factor ERF115 OS... [more]
RAP23_ARATH5.632e-1757.69Ethylene-responsive transcription factor RAP2-3 OS... [more]
ERF82_ARATH5.632e-1763.49Ethylene-responsive transcription factor 3 OS=Arab... [more]
ERF81_ARATH1.255e-1664.62Ethylene-responsive transcription factor 12 OS=Ara... [more]
ERF76_ARATH1.255e-1668.97Ethylene-responsive transcription factor 11 OS=Ara... [more]
ERF78_ARATH1.639e-1668.97Ethylene-responsive transcription factor 4 OS=Arab... [more]
ERF73_ARATH2.140e-1660.61Ethylene-responsive transcription factor ERF073 OS... [more]
EF109_ARATH2.795e-1664.52Ethylene-responsive transcription factor ERF109 OS... [more]
CRF3_ARATH3.650e-1648.84Ethylene-responsive transcription factor CRF3 OS=A... [more]
ERF91_ARATH4.767e-1665.08Ethylene-responsive transcription factor ERF091 OS... [more]

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Properties
Property NameValue
Genbank descriptionC01002B06Rv Veg1 Citrus clementina cDNA clone C01002B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286881 ID=CX286881; Name=CX286881; organism=Citrus clementina; type=EST; length=470bp
CAACATGACAACGTTGGAAGAAGAATCATCCATCCTGGAATTCATTCGCC
AGTTTCTTCTCGGAGACTTTACCTCCTTAGACGACCCAAATCTCTCTTTT
CTCCAGCCTATGGAGTCAGAATTCCCTGTGATCAAATCCGAACCCGACTC
CCCCACCTTTTGTGAAATAATAAAACCTGAACCATTGGACATAACGTGTT
TGGGTTCCAGTAATTGGACAGAATCACCTCAAAAGCGTTCGGAGCCGAAG
CTGGCGGACACTGAAGAGAGGAAGCATTACAGGGGAGTAAGAAGAAGGCC
GTGGGGCAAGTATGCGGCTGAAATCCGGGACCCGGCAAGAAAGGGCAGCA
GGGTTTGGTTGGGAACTTTTGATAGTGATGTTGATGCTGCTAAAGCTTAT
GATTCTGCTGCCTTCCGGATGAGGGGTCGCAAAGCAATCTTGAATTTCCC
TCTGGAGGCTGGAGCTGATA
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