CX286881

Overview
NameCX286881
Unique NameCX286881
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length470
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9553 contig Ccv1_Contig9553:33..502. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.767e-16
Identity = 43/83 (51.81%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  221 ESPQKRSEPK------LADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 451
            E P K+   K      +  T   + +RGVR+RPWGK+AAEIRDP+R+  RVWLGTFD+  +AA  YD+AA ++RG  A LNFP
Sbjct:   62 EKPMKKKRKKRVVTVPVVVTTATRKFRGVRQRPWGKWAAEIRDPSRR-VRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFP 143          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.387e-15
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 2
Query:  278 YRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGA 466
            YRGVR+RPWG+YAAEIRDP +K +RVWLGTFD+   AA+AYD+AA   RG KA  NF +  G+
Sbjct:   31 YRGVRKRPWGRYAAEIRDPVKK-TRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNFGVIVGS 92          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: RAP21_ARATH (Ethylene-responsive transcription factor RAP2-1 OS=Arabidopsis thaliana GN=RAP2-1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.271e-15
Identity = 40/78 (51.28%), Postives = 53/78 (67.95%), Query Frame = 2
Query:  230 QKRSEPKLADTEE----RKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 451
            +KR +P   +       RK YRG+RRR WGK+ AEIR+P  K SR+WLG++ +D+ AA+AYD A F +RG  A LNFP
Sbjct:   11 RKRRQPPQEEVPNHVATRKPYRGIRRRKWGKWVAEIREP-NKRSRLWLGSYTTDIAAARAYDVAVFYLRGPSARLNFP 87          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: TINY_ARATH (Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana GN=TINY PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 6.884e-15
Identity = 41/82 (50.00%), Postives = 59/82 (71.95%), Query Frame = 2
Query:  221 ESPQKRSEPKLADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGA 466
            E+ +++ +P + D+ +   YRGVR+R WGK+ +EIR+P RK SR+WLGTF S   AA+A+D AA  ++G  AILNFP  AG+
Sbjct:   18 ENEEEKKKP-VKDSGKHPVYRGVRKRNWGKWVSEIREP-RKKSRIWLGTFPSPEMAARAHDVAALSIKGASAILNFPDLAGS 97          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF58_ARATH (Ethylene-responsive transcription factor ERF058 OS=Arabidopsis thaliana GN=ERF058 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.174e-14
Identity = 48/118 (40.68%), Postives = 67/118 (56.78%), Query Frame = 2
Query:  110 MESEFPVIKSEPDSPTFCEIIKPEPL----DITCLGSSNWTESPQKRSEPKLADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 451
            ME+  P IKS  +  +      P P+    D+    S + +  P    +   +  +  K YRGVR+R WGK+ AEIR P R  +R+WLGTFD+  +AA AYD AA+++RG  A LNFP
Sbjct:   24 MEALLPFIKSPSNDSSAFAFSLPAPISYGSDLHSF-SHHLSPKPVSMKQTGTSAAKPTKLYRGVRQRHWGKWVAEIRLP-RNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFP 139          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF53_ARATH (Ethylene-responsive transcription factor ERF053 OS=Arabidopsis thaliana GN=ERF053 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.534e-14
Identity = 43/96 (44.79%), Postives = 57/96 (59.38%), Query Frame = 2
Query:  164 EIIKPEPLDITCLGSSNWTESPQKRSEPKLADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 451
            +I+K  P     + +    ES    + P +      K YRGVR+R WGK+ AEIR P R  +R+WLGTFD+  +AA AYD  AF++RG  A LNFP
Sbjct:  149 DILKLSPSGRMMMMNMLRQESDLPLTRPPVQPFSATKLYRGVRQRHWGKWVAEIRKP-RNRTRLWLGTFDTAEEAAMAYDREAFKLRGETARLNFP 243          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: CRF6_ARATH (Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.534e-14
Identity = 37/69 (53.62%), Postives = 52/69 (75.36%), Query Frame = 2
Query:  242 EPKLADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNF 448
            E  ++ + + K YRGVR+RPWGK+AAEIRDP+ + +R+WLGTF +  +AA AYD AA  ++G KA+ NF
Sbjct:   93 EDDVSTSVKPKKYRGVRQRPWGKFAAEIRDPSSR-TRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNF 160          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ESR2_ARATH (Ethylene-responsive transcription factor ESR2 OS=Arabidopsis thaliana GN=ESR2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.003e-14
Identity = 40/57 (70.18%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  278 YRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNF 448
            YRGVRRRPWG+YAAEIRDP  K  R WLGTFD+  +AA AYD AA  MRG KA  NF
Sbjct:   58 YRGVRRRPWGRYAAEIRDPLSK-ERRWLGTFDTAEEAACAYDCAARAMRGLKARTNF 113          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ESR1_ARATH (Ethylene-responsive transcription factor ESR1 OS=Arabidopsis thaliana GN=ESR1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14
Identity = 40/57 (70.18%), Postives = 42/57 (73.68%), Query Frame = 2
Query:  278 YRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNF 448
            YRGVRRRPWG+YAAEIRDP  K  R WLGTFD+   AA AYDSAA   RG KA  NF
Sbjct:   57 YRGVRRRPWGRYAAEIRDPMSK-ERRWLGTFDTAEQAACAYDSAARAFRGAKARTNF 112          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF54_ARATH (Ethylene-responsive transcription factor ERF054 OS=Arabidopsis thaliana GN=ERF054 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14
Identity = 37/60 (61.67%), Postives = 45/60 (75.00%), Query Frame = 2
Query:  272 KHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 451
            K YRGVR+R WGK+ AEIR P R  +R+WLGTFD+  +AA AYD  AF++RG  A LNFP
Sbjct:  141 KLYRGVRQRQWGKWVAEIRKP-RSRARLWLGTFDTAEEAAMAYDRQAFKLRGHSATLNFP 199          
The following BLAST results are available for this feature:
BLAST of CX286881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
CRF1_ARATH4.767e-1651.81Ethylene-responsive transcription factor CRF1 OS=A... [more]
ERF79_ARATH1.387e-1563.49Ethylene-responsive transcription factor 8 OS=Arab... [more]
RAP21_ARATH5.271e-1551.28Ethylene-responsive transcription factor RAP2-1 OS... [more]
TINY_ARATH6.884e-1550.00Ethylene-responsive transcription factor TINY OS=A... [more]
ERF58_ARATH1.174e-1440.68Ethylene-responsive transcription factor ERF058 OS... [more]
ERF53_ARATH1.534e-1444.79Ethylene-responsive transcription factor ERF053 OS... [more]
CRF6_ARATH1.534e-1453.62Ethylene-responsive transcription factor CRF6 OS=A... [more]
ESR2_ARATH2.003e-1470.18Ethylene-responsive transcription factor ESR2 OS=A... [more]
ESR1_ARATH2.616e-1470.18Ethylene-responsive transcription factor ESR1 OS=A... [more]
ERF54_ARATH2.616e-1461.67Ethylene-responsive transcription factor ERF054 OS... [more]

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Properties
Property NameValue
Genbank descriptionC01002B06Rv Veg1 Citrus clementina cDNA clone C01002B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286881 ID=CX286881; Name=CX286881; organism=Citrus clementina; type=EST; length=470bp
CAACATGACAACGTTGGAAGAAGAATCATCCATCCTGGAATTCATTCGCC
AGTTTCTTCTCGGAGACTTTACCTCCTTAGACGACCCAAATCTCTCTTTT
CTCCAGCCTATGGAGTCAGAATTCCCTGTGATCAAATCCGAACCCGACTC
CCCCACCTTTTGTGAAATAATAAAACCTGAACCATTGGACATAACGTGTT
TGGGTTCCAGTAATTGGACAGAATCACCTCAAAAGCGTTCGGAGCCGAAG
CTGGCGGACACTGAAGAGAGGAAGCATTACAGGGGAGTAAGAAGAAGGCC
GTGGGGCAAGTATGCGGCTGAAATCCGGGACCCGGCAAGAAAGGGCAGCA
GGGTTTGGTTGGGAACTTTTGATAGTGATGTTGATGCTGCTAAAGCTTAT
GATTCTGCTGCCTTCCGGATGAGGGGTCGCAAAGCAATCTTGAATTTCCC
TCTGGAGGCTGGAGCTGATA
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